Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-21 >seq2 Length=17806784 Score = 118 bits (130), Expect = 3e-21 Identities = 157/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | ||||| ||||| || || ||||||| ||| ||| || || | Sbjct 3493192 TTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTCCGATACTAT 3493251 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| |||||||| |||||||||||| || || ||| | | Sbjct 3493252 TGAAAATGTGAAAGCTAAA-ATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGTC 3493310 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || ||||| || || |||||||||||||| || || |||| || ||| |||| | Sbjct 3493311 TCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAACATCCAAA 3493370 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| || || || || |||||| | | ||||| Sbjct 3493371 AAGAATCAACGCTCCATCTTGTTCTTCGCCTTCG 3493404 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||| ||| |||||| || | ||| Sbjct 3492084 AAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTCTGATACTATTGAAAAT 3492143 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||||||| || || ||| | || || || Sbjct 3492144 GTTAAAGCGAA-GATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTCATTTT 3492202 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGAC 206333 ||||| || || |||||||||||||| || Sbjct 3492203 TGCCGGTAAACAATTGGAAGATGGAAGAAC 3492232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181783595911897