Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=17806784 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||| | ||| | |||| |||||||| ||||| |||||| | || Sbjct 3493405 ACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGT 3493346 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| | |||||||||| | | || ||||| || |||||||| || || || Sbjct 3493345 TCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCC 3493286 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| |||||| ||||| | ||| | |||||||| | || ||||| | Sbjct 3493285 TTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAG 3493226 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| |||| ||||| | ||||| ||||| Sbjct 3493225 TGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCAT 3493184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||| | ||| | |||| || |||||||| ||||| || | || Sbjct 3492062 ACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGT 3492003 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| | |||||||| | | |||||||||| || |||||||| || || || Sbjct 3492002 TCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCC 3491943 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||||| ||| | | || | || || | | ||| || || | Sbjct 3491942 TTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAG 3491883 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||||| ||||| | |||||||||||| Sbjct 3491882 AGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||| | ||| | |||| || |||||||| ||||| || | || Sbjct 3493177 ACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGT 3493118 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| | |||||||| | | |||||||||| || |||||||| || || || Sbjct 3493117 TCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCC 3493058 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||||| ||| | | || | || || | | ||| || || | Sbjct 3493057 TTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAG 3492998 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||||| ||||| | |||||||||||| Sbjct 3492997 AGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596562078520