Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq450 230 5e-56 seq2107 116 8e-22 >seq450 Length=1262 Score = 230 bits (254), Expect = 5e-56 Identities = 324/453 (72%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 11378 CAGTGCGTAAGGGTTAAAGCGGATCACCTCTTCGCCAAGCCAGTCATTGATGTGCTTCAT 11437 || |||||||||||| ||||| |||||||| || || |||||||| || | |||||||| Sbjct 338 CAATGCGTAAGGGTTGAAGCGAATCACCTCCTCACCCAGCCAGTCGTTAAGATGCTTCAT 397 Query 11438 GGCCTCCATGACGGGCATCAGCTCGTTAATTGCGTAAACCCGCGCGGCCTTCTCCACATC 11497 ||| |||||| ||| |||||||||| | || | || || || || ||||| | ||| Sbjct 398 GGCTTCCATGCAGGGTGTCAGCTCGTTGACGGCTAACACGCGGGCCGCTTTCTCAATATC 457 Query 11498 ACCAAACGCACTTTTTTCGCCCGGCATCGCCCCCATCAGTTGCGGCGGAACGCGGTGCGC 11557 ||| || | || || | |||| || || ||||||||||||||||| || |||||||| Sbjct 458 ACCGAATGAACCGTTCCCTTCCGGAATGGCGCCCATCAGTTGCGGCGGTACCCGGTGCGC 517 Query 11558 AGCCAGCACATCATCACGGGATGCCGCCTTAACATTCATGAACTCATCCTTTGCGGTGAT 11617 ||||||| ||||| |||| | | ||| || || ||||||||||| || | || Sbjct 518 TGCCAGCATGTCATCGCGGGTGGAAGACTTCACCCCCACAAACTCATCCTTAGCCGATAT 577 Query 11618 CTGCTGGAACGGCAAAATTTGCACCCCCTCTTTGCCCCCGTTGGGCGCATGAATGAGCAC 11677 ||| ||| |||| |||||||| | |||||||| ||||| || || || | || | Sbjct 578 CTGGCTGAATGGCAGTATTTGCACGGCGTCTTTGCCGCCGTTAGGTGCCTGCAGAAGGAT 637 Query 11678 GTTTTTAAACGCACCACCACCACGTGCCCCCTGTAGCGTTTCTTTCAGGGAGTCCATGCT 11737 || ||||||||||| | | || || ||| | | ||| || || | ||| Sbjct 638 GTCCTTAAACGCACCGCTGCGCCGGATATCCGCCAGCTTCTTTTTGAGCTTATCAAGGCT 697 Query 11738 TTCGCGGTTTACC--TGCGCTGCACCGATGTAGATGATGCACCCGGCGTGGGATCCGTTG 11795 || ||| || |||||| | ||||||| |||| | || ||||| || |||||| Sbjct 698 CTCCTGGTCGGCCATCGCGCTG--TCAATGTAGACGATGTAGCCAGCGTGCGAGCCGTTG 755 Query 11796 TCGTAGTACAGTTTTCTGAACATGTCCGCCGAA 11828 |||||||| || |||||||| | || || ||| Sbjct 756 TCGTAGTAGAGCTTTCTGAATTTTTCAGCAGAA 788 >seq2107 Length=232 Score = 116 bits (128), Expect = 8e-22 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 33561 ATTGGCTGGAAAGGAGAACCGCTGACAGAAAAAGGCACTTACATTGTTGATGAAATCGCT 33620 || |||||| | |||||| ||| | | ||||| | || ||| || |||||||| || Sbjct 46 ATAGGCTGGCAGGGAGAAAAACTGGTACACAAAGGGATTTTCATCGTGGATGAAATTGCG 105 Query 33621 CACGAAGGACCGCCGGACAGGCTGACTGTTTCAGCCAGAAGCGCAGATTTTCGGGATGAA 33680 ||| ||| ||||||||| | | | | |||||||| |||||||| || |||||| Sbjct 106 CACTCAGGGCCGCCGGACCGTATCGAGATCACGGCCAGAAGTGCAGATTTCCGCGATGAA 165 Query 33681 TTTAACGTTAAACGTGAGGTGTCCTGGCATGATGTGACCGTTGAGCGTGTGGTATCCGCC 33740 ||||||||||| || |||||||| |||||||| || || || || || | || || || Sbjct 166 TTTAACGTTAAGCGGGAGGTGTCGTGGCATGACGTTACAGTAGAACGCATCGTCTCTGCT 225 Query 33741 ATCGCTC 33747 || |||| Sbjct 226 ATAGCTC 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114479859737984