Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 >seq2 Length=17806784 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | || || | ||||| ||||| | Sbjct 3493184 ATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTCC 3493243 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| |||||||| || || || || |||||| Sbjct 3493244 GATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 3493303 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| | ||| |||||| | ||||||| |||| | ||| || || Sbjct 3493304 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAAC 3493363 Query 25355 ATTCAAAAAGAATCCAC 25371 || ||||||||||| || Sbjct 3493364 ATCCAAAAAGAATCAAC 3493380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12207178 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12207119 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| |||||||| || || || || || || Sbjct 12207118 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCA 12207059 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | | ||||| |||||||| |||| | | | | || ||||| Sbjct 12207058 GCAGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAA 12206999 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||| || || || |||| |||||| | | |||||||| |||| Sbjct 12206998 TATCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGGAA 12206949 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| || || || ||| | || || | || || || || Sbjct 3491837 CAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGC 3491896 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || || ||| | || ||| ||||| |||||||| || || || || || Sbjct 3491897 ATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGA 3491956 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 ||||||| | || || | | || |||||| | ||||||| ||||| | |||| || Sbjct 3491957 TCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAG--AT 3492014 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 |||||||||||||| ||||| || Sbjct 3492015 TACAATATTCAAAAGGAATCAAC 3492037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| || || || ||| | || || | || || || || Sbjct 3492952 CAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGC 3493011 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || || ||| | || ||| ||||| |||||||| || || || || || Sbjct 3493012 ATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGA 3493071 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 ||||||| | || || | | || |||||| | ||||||| ||||| | |||| || Sbjct 3493072 TCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAG--AT 3493129 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 |||||||||||||| ||||| || Sbjct 3493130 TACAATATTCAAAAGGAATCAAC 3493152 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12207634 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12207575 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12207574 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12207515 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12207514 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12207455 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12207454 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12208090 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12208031 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12208030 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12207971 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12207970 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12207911 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12207910 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207863 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12208318 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12208259 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12208258 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12208199 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12208198 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12208139 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12208138 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12208546 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12208487 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12208486 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12208427 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12208426 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12208367 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12208366 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208319 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12208774 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12208715 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12208714 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12208655 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12208654 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12208595 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12208594 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208547 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| || ||| | || || | ||||||||||| Sbjct 12209002 CATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTC 12208943 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || ||||| || || || || || || Sbjct 12208942 GGACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCA 12208883 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || ||| | || |||| | | | | ||| ||||| Sbjct 12208882 GCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAA 12208823 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || || || ||||||| || | ||| |||||||||| Sbjct 12208822 TATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080730038240