Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=17806784 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||||||||| || || || ||||| ||||| ||| | Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| || ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 3493302 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || |||| ||| || |||||||| |||||| | ||| | ||| || || Sbjct 3493303 GCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAA 3493362 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 ||| ||||||||||| || || ||| Sbjct 3493363 CATCCAAAAAGAATCAACGCTCCAT 3493387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||||||||| || |||||||| ||||| || ||||| ||| | Sbjct 3492068 AATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTC 3492127 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| || || ||||||||||| | || ||||| Sbjct 3492128 TGATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 3492187 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT 106415 |||| | || |||| ||| || |||||||| |||||| Sbjct 3492188 ACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGAT 3492224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402317552365856