Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1838 118 2e-20 seq27 113 6e-19 seq10 113 6e-19 seq8 109 8e-18 seq11 96.9 5e-14 >seq1838 Length=280 Score = 118 bits (130), Expect = 2e-20 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 230 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 177 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| || |||| | ||||||| Sbjct 176 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGTATCGCCGCCGAGGCTTCG 117 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| ||| || ||| | || ||||||||||| |||||| Sbjct 116 CGTCTCGCTCACTACAACAAACGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 57 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 56 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 5 >seq27 Length=2371257 Score = 113 bits (124), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 2368631 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 2368684 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| ||||||| | ||||||| Sbjct 2368685 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAGGCTTCG 2368744 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || || |||||||| |||||| Sbjct 2368745 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAAATCCAGACGGCCGTG 2368804 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 2368805 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 2368856 Score = 109 bits (120), Expect = 8e-18 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 2361187 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 2361240 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| |||| || | ||||||| Sbjct 2361241 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGCACCGCCGCCGAGGCTTCG 2361300 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || || |||||||| |||||| Sbjct 2361301 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAAATCCAGACGGCCGTG 2361360 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 2361361 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 2361412 >seq10 Length=9558897 Score = 113 bits (124), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 649093 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 649040 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| || |||| | ||||||| Sbjct 649039 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGTATCGCCGCCGAGGCTTCG 648980 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || ||||||||||| |||||| Sbjct 648979 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 648920 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 648919 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 648868 Score = 113 bits (124), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 2202605 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 2202552 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| || |||| | ||||||| Sbjct 2202551 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGTATCGCCGCCGAGGCTTCG 2202492 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || ||||||||||| |||||| Sbjct 2202491 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 2202432 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 2202431 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 2202380 Score = 113 bits (124), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 2211530 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 2211583 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| || |||| | ||||||| Sbjct 2211584 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGTATCGCCGCCGAGGCTTCG 2211643 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || ||||||||||| |||||| Sbjct 2211644 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 2211703 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 2211704 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 2211755 >seq8 Length=10932247 Score = 109 bits (120), Expect = 8e-18 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 2249 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 2302 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| |||| || | ||||||| Sbjct 2303 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGCACCGCCGCCGAGGCTTCG 2362 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || || |||||||| |||||| Sbjct 2363 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAAATCCAGACGGCCGTG 2422 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 2423 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 2474 Score = 109 bits (120), Expect = 8e-18 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| || | || | || | ||| || Sbjct 581626 ATCTACAAGGTGCTGAAGCAGGTACACCCGGACACTGGTGTG------TCGAGCAAAGCC 581679 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| |||| || | ||||||| Sbjct 581680 ATGAGCATTATGAACAGCTTCGTGAACGACATCTTCGAGCGCACCGCCGCCGAGGCTTCG 581739 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| ||| || ||| | || || |||||||| |||||| Sbjct 581740 CGTCTCGCTCATTACAACAAACGCTCGACCATCACGTCCCGGGAAATCCAGACGGCCGTG 581799 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| || ||||||| |||||||||| ||||||||||| Sbjct 581800 AGGCTGCTGCTTCCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 581851 >seq11 Length=9115147 Score = 96.9 bits (106), Expect = 5e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| ||||| || | || | || | ||| || Sbjct 6454017 ATCTACAAGGTGTTGAAGCAGGTTCACCCGGACACTGGTGTG------TCGAGCAAAGCC 6454070 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||||| |||| ||||||| | |||| || Sbjct 6454071 ATGAGCATAATGAACAGCTTCGTGAACGACATTTTCGAGCGCATCGCCGCCGAAGCTTCG 6454130 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| ||| || || | || ||||||||||| |||||| Sbjct 6454131 CGTCTCGCTCACTACAACAAACGCTCGACCATTACGTCCCGGGAGATCCAGACAGCCGTG 6454190 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | ||| || ||||||| |||||||||| ||| ||||| Sbjct 6454191 AGGCTCCTGCTACCCGGTGAGCTGGCCAAGCACGCCGTCAGCGAAGGCAC 6454240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177574217834034