Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=17806784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12209015 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12209074 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12209075 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12209134 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12209135 TCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTAATT 12209194 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || ||||| || || ||||| |||||||| Sbjct 12209195 GTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12207419 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12207478 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12207479 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12207538 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12207539 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12207598 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12207599 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12207875 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12207934 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12207935 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12207994 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12207995 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12208054 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12208055 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12208103 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12208162 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12208163 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12208222 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12208223 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12208282 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12208283 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12208331 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12208390 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12208391 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12208450 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12208451 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12208510 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12208511 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12208559 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12208618 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12208619 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12208678 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12208679 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12208738 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12208739 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||||| | || |||||| || || ||||| |||| || || || | Sbjct 12208787 CTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA 12208846 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||||| || || |||| ||||||||||| | |||| || || ||| Sbjct 12208847 TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTG 12208906 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | || || Sbjct 12208907 TCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATT 12208966 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || || || || ||||| Sbjct 12208967 GTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779755001560