Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq34 107 2e-18 >seq2 Length=17806784 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | || | ||| | ||| ||||| || |||||||| || |||||||| Sbjct 12206949 TTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAG 12207008 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || ||||| || ||||| ||||| |||| ||||||||| || || | Sbjct 12207009 ATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGG 12207068 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| || ||||| || ||||| || | |||||| || | ||| | Sbjct 12207069 GAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207128 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12207129 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| ||||||| || | || || || || ||||| || || ||||||||| Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207358 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12207359 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| ||||||| || | || || || || ||||| || || ||||||||| Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207814 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12207815 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207586 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12207587 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208042 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12208043 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208270 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12208271 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208498 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12208499 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208726 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12208727 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | |||||| || | ||| || Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208954 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || ||||| || ||||||||||||||||| Sbjct 12208955 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC-AACGGTGTGAGAGTCGTC 134563 || || || ||||| ||||| ||||| ||||| |||||| || | | | | || || Sbjct 3493392 ACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCA-TCTTC 3493334 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||||| || |||||||| | ||| |||||||| || || || |||||||| ||||| Sbjct 3493333 CAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 3493274 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 |||||| ||| || || | || ||||| | ||| || || || ||||| ||||| Sbjct 3493273 AATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTT 3493214 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || || ||||| || |||||||||||| Sbjct 3493213 ACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||||||||| ||||| || || || | || || | ||||| || Sbjct 3492037 GTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCA 3491978 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||| |||||||| || || || |||||||| || || ||||| ||| Sbjct 3491977 GCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTA 3491918 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 3491917 ACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTT 3491858 Query 134697 TTAACGAAAATTTGCATTTTG 134717 ||||||||||| ||||| ||| Sbjct 3491857 TTAACGAAAATCTGCATCTTG 3491837 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||||||||| ||||| || || || | || || | ||||| || Sbjct 3493152 GTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCA 3493093 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||| |||||||| || || || |||||||| || || ||||| ||| Sbjct 3493092 GCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTA 3493033 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 3493032 ACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTT 3492973 Query 134697 TTAACGAAAATTTGCATTTTG 134717 ||||||||||| ||||| ||| Sbjct 3492972 TTAACGAAAATCTGCATCTTG 3492952 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| |||| || || | || || || || ||||| || || ||||||||| Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || || ||||||| ||||||||| || || || Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || ||||| || | |||||| || | ||| || Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACT 12209182 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || || || || || || || || || || ||||| Sbjct 12209183 TCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || |||||||| | ||| || ||||| || || || |||||||| ||||| || Sbjct 3492214 TGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATC 3492155 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || || | || || || | ||| || || | || |||||||| || Sbjct 3492154 TTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGATGGTTTTGCCA 3492095 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| |||||||| |||||||||||| Sbjct 3492094 GTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq34 Length=1613596 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 |||||||| || ||||| | || || ||| || || ||||| || |||||||| Sbjct 772944 TTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAATT 773003 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 || | || ||||| || || ||||||||||| ||||| || || ||| || || Sbjct 773004 AATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTTCA 773063 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | || || || | ||| || || || ||||| || || || ||||||||||||||||| Sbjct 773064 ATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGAAG 773123 Query 134706 ATTTGCATT 134714 ||||||||| Sbjct 773124 ATTTGCATT 773132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382877951640