Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq516 176 7e-39 >seq516 Length=1145 Score = 176 bits (194), Expect = 7e-39 Identities = 397/595 (67%), Gaps = 25/595 (4%) Strand=Plus/Plus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 ||| | ||| | || | || ||||||||||| || || || || || | || ||| | Sbjct 473 GCTCTCATCACCGGCGTTACCGGGCAGGATGGTTCTTACCTGGCAGAGTTCCTGCTGGAA 532 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || ||||||||||| || ||||||| ||| | | || || || || || | | | | Sbjct 533 AAAGGGTATGAAGTACACGGTATTAAACGTCGTGCGTCTTCTTTCAACACCGAACGTGTG 592 Query 161084 GATCATATCT-TC--GATC------------------AGTTACACCTCCACTACGGGGAT 161122 |||||||| | || |||| | || || || |||||||| || Sbjct 593 GATCATATTTATCAGGATCCTCACGCGGCGAACCCGAAATTCCATCTGCACTACGGCGAC 652 Query 161123 TTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTAC 161182 |||| || || ||| | | |||| | |||||||| | || ||||| ||||| Sbjct 653 CTGACCGATACCTCCAACCTGACCCGTATCCTGCAGGAAGTACAGCCGGATGAAGTCTAC 712 Query 161183 AACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACAG 161242 ||||| || || ||| || || || || ||||| || ||||| || || | Sbjct 713 AACCTGGGCGCGATGAGCCACGTAGCGGTCTCCTTCGAATCCCCGGAATACACCGCCGAC 772 Query 161243 ACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTAT-GACA-G 161300 ||||||| |||| || || | | |||| ||| | || |||| || | || | | Sbjct 773 GTTGATGCTATGGGTACGCTGCGTCTGCTGGAAGCAATCCGCTTCCTCGGCCTTGAGAAG 832 Query 161301 ATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACAC 161360 | | | || ||||||||||||||||| |||| |||| || |||| || || | | Sbjct 833 AAAACG--CGCTTCTACCAGGCATCCACCTCTGAGCTGTACGGTCTGGTGCAGGAAATCC 890 Query 161361 CACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATG 161420 ||||||||||||| || || |||||||| || ||||| |||| ||||| ||||| || | Sbjct 891 CACAGAAAGAAACCACTCCGTTCTACCCGCGCTCTCCGTATGCGGTAGCAAAACTGTACG 950 Query 161421 GATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTC 161480 || ||||| ||||||| | || || || ||| ||||| ||| || || | Sbjct 951 CCTACTGGATCACCGTGAACTACCGTGAATCCTACGGCATGTACGCCTGTAACGGCATCC 1010 Query 161481 TATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTAC 161535 | |||||||| || || || || || || || || ||||| ||||| || || || Sbjct 1011 TGTTCAACCACGAATCTCCGCGTCGCGGCGAAACCTTCGTGACCCGCAAAATCAC 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729907182037160