Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 159 5e-34 seq3 95.1 2e-14 >seq8 Length=10932247 Score = 159 bits (176), Expect = 5e-34 Identities = 205/283 (72%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 68644 ATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGA 68703 |||||| ||| || || || |||| ||| | ||||| || || ||| || | | | | Sbjct 3800453 ATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTTTCGGTCAAATCTTTTAATAAA 3800394 Query 68704 TGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTA 68763 || |||||||| | |||||||| || || | || | | || || |||||||| || Sbjct 3800393 TGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGTCTTGTATAGATATTACTCGTG 3800334 Query 68764 TATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGT 68823 || ||||| | |||||||||||| || || |||||||| || || || |||||||| || Sbjct 3800333 TAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCTGTAGAAGCTGTTGGCATTGGA 3800274 Query 68824 GCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAA 68883 || | ||||| || | | ||||| | || ||||||||||||| | ||||| Sbjct 3800273 GCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATTTTATCTTTTAAAGCACTCCAA 3800214 Query 68884 TCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 | ||||||||| | ||| | |||||||| | ||||||||||| Sbjct 3800213 TTCCAAAGATCTGTTGGAATTACATTCCACATATCGTATTGTA 3800171 Score = 147 bits (162), Expect = 3e-30 Identities = 271/394 (69%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| || || | |||||| || || || ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| ||||| |||| | |||| || || ||||| || || || | ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 69236 AATCAAATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 | ||| | ||| | ||| |||||||||||| | || | |||||||| |||| Sbjct 3799470 AGTCATA-CGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTA 3799412 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 || || || || |||| | | | |||||| | | || |||||||||||||||| | Sbjct 3799411 CACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTT 3799352 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 |||| || || ||||| | ||||| ||| ||||||| || || ||||| || Sbjct 3799351 CTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATG 3799292 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 | |||||||||||||||| || || | | ||| | |||| | | || ||||| Sbjct 3799291 TAAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCATAAATCTCTGGCATTA 3799232 Query 69469 A-TTACGGTCTTGTAACGCTTCTCTTTTTCATAT 69501 | || | || || |||| ||||||| || ||| Sbjct 3799231 ATTTGCCGT-TTAAAACGTTTCTCTTCCTCGTAT 3799199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| | ||||||||||||| ||| ||||||||| | ||| ||||| || Sbjct 3799011 TTCAAATTCCTGTCCCCAAACATCAGGCAAATTAGGACATTCGTGTGGGCACATTAAACT 3798952 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | |||||| | ||||| || |||||||| ||| || ||||| | ||| ||| Sbjct 3798951 CCATATTCCATCATTCAAAACTCTTTCCATAAATAAATCAGGGATCCACAAAGCATAAAA 3798892 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTATTT 69672 | ||||| | |||||||||||| || ||| |||| Sbjct 3798891 TAACTCTCTCGCTCTATTTTCTTCTTTACCTACATTT 3798855 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 70095 CGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAG 70154 ||| || | ||| | |||||||||||| | ||| || ||| ||| ||||| || | Sbjct 3798077 CGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAATAA 3798018 Query 70155 GTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT 70214 ||| | |||||| |||||||| |||||||| || || ||| ||||| |||||||| Sbjct 3798017 GTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAAAT 3797958 Query 70215 AATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||||| | |||||| || | ||| Sbjct 3797957 AATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 >seq3 Length=17417032 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 ||| | ||| ||| ||||| |||||||||||||| || | |||||| ||||| ||||| Sbjct 7878531 AATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTCAGCCAGAATAT 7878472 Query 39712 GGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||||| ||| ||| |||||||| || || || || ||||| |||| | | | | Sbjct 7878471 GGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCAATTA--CGCGC 7878414 Query 39772 TCCGTAACTTGTATCATTAT-GT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTT 39825 || | || ||| || | | || ||||| ||| ||||||| |||||| || Sbjct 7878413 TCGGCAA-ACGTAGCACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAGCTTTTTTAGC 7878355 Query 39826 TACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| || |||| |||||| || || || || || Sbjct 7878354 TACGCAGGGCAGTGTTTCGATGGCGTTGAATAG 7878322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887703313480