Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25 140 3e-28 >seq25 Length=3995362 Score = 140 bits (154), Expect = 3e-28 Identities = 226/323 (70%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 19210 TTATTA--CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTT 19267 |||||| || ||||| || | || | ||| ||||||||| || ||| || || Sbjct 85541 TTATTAATCCTGATTGGGATTTCAATAAAATGGGAATTGGAGGTTTAGATAAGGAATTCA 85482 Query 19268 CTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAAT 19327 || ||| ||| | |||||||||| || | |||||| | |||| || ||| |||| Sbjct 85481 GTGCAATATTTAGAAGAGCATTTGCTTCAAGAGTTTTTCCACCAGAAGTTGTTACACAAC 85422 Query 19328 TGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACAT 19387 | |||||||| ||||| || |||| | ||||| ||||| || ||| |||||| Sbjct 85421 TTGGATGTAAGCATGTAAAAGGTATTTTATTGTATGGACCACCAGGCACTGGTAAAACAC 85362 Query 19388 TAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATG 19444 | || || ||| || || | || ||| | ||| | |||| || ||||| |||| Sbjct 85361 TTATGGCTAGACAAATTGGAAATATGTTAAATGCAAGAGAACCA---AAGATTGTTAATG 85305 Query 19445 GTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTG 19504 | ||| |||| || |||||||||| ||| || |||| ||| || || | || |||| Sbjct 85304 GACCTCAAATTTTGGATAAATATGTTGGTGAAAGTGAAGCAAACATAAGAAGATTATTTG 85245 Query 19505 CTGACGCTGAAGAAGAACAAAAA 19527 |||| |||||||||||| ||||| Sbjct 85244 CTGATGCTGAAGAAGAAGAAAAA 85222 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 19567 GATGAATTGGACGCAATCTGTAAGCAAAGAGG------TTCTGGTGTAAATGGAGTACAT 19620 ||||| | || || |||||||| |||||| | |||||| | || || ||| Sbjct 85071 GATGAGATTGATGCTATCTGTAAAGCAAGAGGAAGTGTTGCTGGTGCTACAGGTGTTCAT 85012 Query 19621 GACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATT 19680 || || || || |||||| | || ||||| | || |||||| | ||| | ||||||||| Sbjct 85011 GATACAGTAGTGAATCAATTACTTGCAAAAATTGATGGTGTTGAACAATTAAATAATATT 84952 Query 19681 TTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGT 19740 ||||||||||| |||||||| |||| || | || || || ||||||||||| ||| Sbjct 84951 TTAGTTATTGGGATGACTAACAGACGAGATATGATTGATGAGGCTTTATTACGACCTGGT 84892 Query 19741 CGGTTGGAAATAAA 19754 | ||||| |||| Sbjct 84891 AGATTGGAGGTAAA 84878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444098304285