Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 1e-10 >seq1 Length=27400720 Score = 82.4 bits (90), Expect = 1e-10 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 181826 CGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTT 181885 ||| || || |||||| || | ||||| |||||||| || || | ||| | Sbjct 5938086 CGTGCCGAACTGACCAATGGGTTGTAGAAGATTAATGTTATTACTTCCGACAAAGTTCTG 5938027 Query 181886 GGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTC 181945 ||||| ||||| || ||| || ||||||| ||| || || || ||||| || | || Sbjct 5938026 CGCCAAATTAACAATCGTAGCCATGAGGGACATTTCTCCATGATGATAAGCCGAGTGCTC 5937967 Query 181946 CGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGCA 182005 ||||| | || ||||||| || || |||| || || |||| | | ||| || Sbjct 5937966 GGCAACCGACGCACCCAACTGCGCGACTTTCACCTCGCGCTTATCGTTCCTCTTGAAACA 5937907 Query 182006 AGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 | ||||| |||||||||||| |||||| | |||||| Sbjct 5937906 GGTATACAACACTTTCCTCTGTCCAGGCTTTAAGCCATCC 5937867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012711567200