Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 109 6e-19 >seq8 Length=10932247 Score = 109 bits (120), Expect = 6e-19 Identities = 233/348 (67%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 ||| | |||| || ||| | ||||| ||| || |||||||| || ||||||||||| Sbjct 3799242 GATTTATGGACTGCAATTTTAAAGTCGCAAGTTGAAACTGGTACTCCTTACATGCTTTAT 3799301 Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001 ||||| |||||| ||| |||||||||||| | ||| |||| ||| ||| Sbjct 3799302 AAAGATCATTGTAACAGGAAGTCAAATCAAAAGAATCTTGGTACCATCAGAAGTAGTAAT 3799361 Query 105002 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 105061 || ||||| ||| | || ||| | | |||||| ||| |||||||| | ||| Sbjct 3799362 CTATGTACCGAAGTTGTGCAATATTCTTCTCCAGATGAAGTGGCGGTGTGTAATTTAGCA 3799421 Query 105062 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 105121 || |||||| | | || ||| || | | ||| || | ||| | | ||||| | Sbjct 3799422 TCTATCGCTGTTAATATGTTTGTTAATGTCAATAAAAAAACGTATGACTTTCAAAAATTG 3799481 Query 105122 CACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 105181 | |||||||| ||| ||| ||| |||| || | | |||||||| |||| ||| Sbjct 3799482 AAAGAAGTTACCAAAGTTGTTACCCAAAATTTAGATAAGATTATTGATCTTAATTATTAT 3799541 Query 105182 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || || | ||| | ||| || | ||||| |||||||||||| Sbjct 3799542 CCAATTAAAGAAGCTGAGAGATCGAACTTCAGACATCGTCCAATTGGT 3799589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242886602680