Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=8037603 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 || || || |||||||||||||| | || | ||| ||||||||||||||||||||| Sbjct 7579957 GTTATATGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGGCACACCG 7580016 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 || || ||||| | |||||| || || ||||| || |||| | | | |||||| Sbjct 7580017 AGACCTATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGCTACATAA 7580076 Query 111901 AATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 |||||| ||| | |||||||||||| | ||||| Sbjct 7580077 AATTGAACAAGAATATGACAAGGAGGAAGAGCCAT 7580111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 ||| |||| ||| ||||||||||||| || ||||| | ||| || | ||||||| || Sbjct 7580625 TATTTTGCTCCAAAGTGTCTCCATTGAAAGCCATACACAGGGCCTAAATCTCCCTCTTCT 7580684 Query 112123 GTATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTTC 112182 ||| | |||| | || ||| || |||| | | ||| || || |||||| | Sbjct 7580685 CGATCGGTGAATTTACATAAATCCAAAAATTCACGTGAACTATTAGCATCCCAAATGTGT 7580744 Query 112183 ACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCT 112242 || |||| ||||| ||| |||||||||| || |||||||| ||||| || ||||| Sbjct 7580745 ACATCTTTTTCAGATAATTCTTTTGCATTTGTTGAACCTCTAATGAACCAAAGTAATTCC 7580804 Query 112243 TCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 || || || || ||| | || | ||| || || | | |||||| Sbjct 7580805 TCGACCACTCCCCGCCAAAATACACGTTTGGTTGTCAATAATGGAAA 7580851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391933863311491