Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 >seq1 Length=27400720 Score = 111 bits (122), Expect = 2e-19 Identities = 195/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || || | ||||||||||||| | | | ||| ||||| || Sbjct 5938133 GTGAAAATGTAACGAGGACTGGCGGAATCCTTGCCACCAACTAACCTCGTGCCGAACTGA 5938074 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||| || || |||||||| || ||||| || ||| Sbjct 5938073 CCAATGGGTTGTAGAAGATTAATGTTATTACTTCCGACAAAGTTCTGCGCCAAATTAACA 5938014 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 |||||| | |||| | || ||||| ||||| |||| ||||| || || | | Sbjct 5938013 ATCGTAGCCATGAGGGACATTTCTCCATGATGATAAGCCGAGTGCTCGGCAACCGACGCA 5937954 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| ||| || || |||| || | | |||| |||||| |||| ||| | ||| Sbjct 5937953 CCCAACTGCGCGACTTTCACCTCGCGCTTATCGTTCCTCTTGAAACAGGTATACAACACT 5937894 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588 || | ||| | ||||| | |||||| || || || ||||| Sbjct 5937893 TTCCTCTGTCCAGGCTTTAAGCCATCCATCATGTTCGGTATCGA 5937850 Score = 104 bits (114), Expect = 3e-17 Identities = 196/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||| ||||| || | ||||| | |||||||||||| | | || ||| || ||||| Sbjct 5938134 CGTGAAAATGTAACGAGGACTGGCGGAATCCTTGCCACCAACTAACCTCGTGCCGAACTG 5938075 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||| ||| | || || || | ||| || || || || ||||| |||||||| || Sbjct 5938074 ACCAATGGGTTGTAGAAGATTAATGTTATTACTTCCGACAAAGTTCTGCGCCAAATTAAC 5938015 Query 152148 AATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 |||||| ||| || || | ||| || || ||||| |||| ||||| || | | Sbjct 5938014 AATCGTAGCCATG-AGGGACATTTCTCCATGATGATAAGCCGAGTGCTCGGCAACCGACG 5937956 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | |||||||||| || |||| || | | |||| |||||| ||||| || | || Sbjct 5937955 CACCCAACTGCGCGACTTTCACCTCGCGCTTATCGTTCCTCTTGAAACAGGTATACAACA 5937896 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGA 152312 | || | ||| || || || || |||| || || || ||||| Sbjct 5937895 CTTTCCTCTGTCCAGGCTTTAAGCCATCCATCATGTTCGGTATCGA 5937850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199193628600