Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq64 1312 0.0 >seq64 Length=39090 Score = 1312 bits (1454), Expect = 0.0 Identities = 1088/1321 (82%), Gaps = 12/1321 (1%) Strand=Plus/Minus Query 2455 ATGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCAT 2514 |||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 11074 ATGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCT 11015 Query 2515 CGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCC 2574 || ||||||||||||||||| || | ||| ||||||||||| || |||| ||||||| Sbjct 11014 TATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCC 10955 Query 2575 TTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTT 2634 || |||||| || || ||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct 10954 TTTCCAGCAGCCGGCGGTTGTTGTACCAGTCCACCCACGTCAGTGTCGCCAGCTCCACTT 10895 Query 2635 CTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGC 2694 | || ||| |||||||||| ||||| ||||| ||||||||||||||||| || ||||||| Sbjct 10894 CGGCGCGGGTTTTCCAGCTTTTACGATGTATAACCTCCGCTTTGTAAAGTCCGTTGATGC 10835 Query 2695 TCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGG 2754 |||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || | Sbjct 10834 TCTCTGCCATTGCGTTGTCATATGAGTCGCCGGTGCTGCCCGTTGATGCCAGCAGCCCTG 10775 Query 2755 CTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT 2814 | || || || || | ||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 10774 CGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACATACTGAGAGCCTTTATCGCTGTGAT 10715 Query 2815 GGATGGTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAAT 2873 ||||||| || ||||| ||| | ||||||||| ||||||||| |||||||||| ||||| Sbjct 10714 GGATGGTCCC-GACGGGACGTCTGGCCCACAATGCCTGCTCCGGCGCATCCAGTACGAAC 10656 Query 2874 GTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATG 2933 || |||||||| ||||||||||||||||| ||||||||| ||||| |||||||| ||| Sbjct 10655 GTTGTTTCCATCGACGATGAGACCCGCCATCCCACGATGCGACCGGCGAACACATCGATG 10596 Query 2934 ATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCAC 2993 || ||||||||||| ||||||||||| | |||||||| | |||||||||||||||||| Sbjct 10595 ATGAACGCCACATACGCGAAGCCCTGCAAGGTGCTGACACAGGTAAAATCAGCCACCCAC 10536 Query 2994 AGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCT 3053 ||||||||||| ||||| ||||||||||| ||||| || ||||| |||| ||| | || Sbjct 10535 AGCTGGTCAGGCCGTTCGGCCACGAACTGGCGGTTCACACGGTCATCTGCAGCAGCCTCT 10476 Query 3054 TTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACC 3113 || ||||||| ||| || || |||||||| |||||| | || || || | ||||| || Sbjct 10475 TTACGGCTGACGGTGGTTCGTACCTTTTTGCCCCGGCGTACCCCTGCCCGCCCCATCGCC 10416 Query 3114 GCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGC 3173 ||| || ||| |||| |||||||||||| | ||||| |||||| | |||||||||| Sbjct 10415 TTCATCAGCCGTTCCACGGTACATCTGGCCGCGCTGATGTGTTCCCGGAGCAACTGACGC 10356 Query 3174 CAGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTATACGCGCTGTATCTCTCT 3232 ||||| || || || || ||||| ||| || |||||||| || || ||||||||||| | Sbjct 10355 CAGACCTTGCGGACGCCATACACACTG-TGGTTTTCATCATACACACGCTGTATCTCCGT 10297 Query 3233 CTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATG-ATGTCGCTGTT 3291 |||||| || ||| |||| |||| | ||||| | |||||||| ||| || || | Sbjct 10296 TTTCAGCAGGTGGTCACGCTGTTCACGCGGGCTGCGCCTGTCCGGATGCATG-CGGTGGT 10238 Query 3292 GCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCC 3351 ||||| | ||||||| || |||||||| |||| |||||| ||||||||||||||||| Sbjct 10237 GCTGATACCGGTAATATGTCGACGGGGCGATATCCAGTTCCTGGCATACCGGTCCGACCC 10178 Query 3352 CGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTC 3411 | | || | |||||| |||||| ||| || ||||||||||||||||||||||||| Sbjct 10177 CATGCTCATTACGCAGGGTATCCACCAGAGGGGCTATTTTTTCCAGAGGCGGTCGAACTC 10118 Query 3412 CGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACG 3471 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 10117 CGCCTTCGCAAAATAAGCGGAAGCCTGTCGCAGGATATCGTTACTGCGGCGCAGTTCGCG 10058 Query 3472 ATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACC 3531 ||||||||||||||||| || |||||||| ||||||| | ||||||| || || ||| Sbjct 10057 GTTTTCACGTTCCAGCTCCTTGAGACGCTGGCGTTCAGTGGTGGTGAGTCCGCCGTCA-- 10000 Query 3532 GCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCC 3591 |||| ||| || ||||||||||||| |||| || || |||||||| |||||||| Sbjct 9999 ----CCGGCATCACGTTCATGCTGGCGAAGCCAGGTGCGAAGCGTCTCCGGTGTACAGCC 9944 Query 3592 AATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTC 3651 || || ||||| | || | || || ||||| ||||||||||| || | ||| | ||| Sbjct 9943 GATTTTGGGGGCGACAGAGCTGATGGCAGCCCATTGTGAGTCATAGTCGTTCTGGCCTTC 9884 Query 3652 CAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCAT 3711 | ||||| ||||| |||||||||||||| || |||||||| || |||||||||||||| Sbjct 9883 GATAACCAGACGAACGGCCCGCTGACGGACCTCAGGGGAAAAGCGCGTATTTTTAGTCAT 9824 Query 3712 CCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAGAATGA 3771 ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| || | Sbjct 9823 CCTGTTTACCTCTCTCTCAAAGAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAGGATTA 9764 Query 3772 C 3772 | Sbjct 9763 C 9763 Score = 504 bits (558), Expect = 3e-138 Identities = 431/531 (81%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 2491 TGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTT 2550 || |||||||||||||||||||| ||||| | |||||||| ||||| || |||||||| Sbjct 38559 TGGGAACTCAGGCTGCCAGATCACCGTTTACAATGGAAGCGTAATATGCCAGTTCTGCTT 38500 Query 2551 CTGCCGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCC 2610 |||| || || |||| ||| ||||| |||||| || |||||||| ||||||||||||| Sbjct 38499 CTGCTGGCGGGATATGCCCCGGCCTTTCCAGCAGCCGGCGATTGTTGTACCAGTCCACCC 38440 Query 2611 ACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCT 2670 ||| |||| |||||||| || ||||||||||| |||| |||||||| |||| Sbjct 38439 ACG---------CCAGCTCCACTTCGGCGCGGTTTTTCCATTTCTTGCGGTGTATCACCT 38389 Query 2671 CCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTAC 2730 | ||||| ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| | Sbjct 38388 CTGCTTTATAAAGGCCATTGATACTCTCTGCCATTGCGTTGTCGTATGAGTCGCCTGTGC 38329 Query 2731 TCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACAT 2790 |||| ||||||||||||| || || || || || || | ||| || ||||| ||||||| Sbjct 38328 TCCC-GTTGATGCCAGTAGCCCTGCGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACAT 38270 Query 2791 ACTGAGAGCCTTTATCGCTGTGATGGATGGTGCCAGACGGACGACGGGCCCACAACGCCT 2850 |||| ||||||||||| ||||||||| || || | ||| || |||||||||||||||| Sbjct 38269 ACTGCGAGCCTTTATCTGAGTGATGGATAGTTCCTGCCGGCCGTCGGGCCCACAACGCCT 38210 Query 2851 GCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGA 2910 ||||| |||| ||||| ||||| ||||||||||| || || || ||||| || ||||||| Sbjct 38209 GCTCCGGCGCGTCCAGTACGAACGTCGTTTCCATCGATGACGACACCCG-CAGCCCACGA 38151 Query 2911 TGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 2970 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||||| Sbjct 38150 TACGACCCGCGAACACGTCGATGATGAACGCCACATAAGCAAAGCCCTGCCAGGTGCTGA 38091 Query 2971 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACT 3021 |||| || || || ||||||||||||||||| || ||| | ||||||||| Sbjct 38090 CGTACGTGAAGTCTGCCACCCACAGCTGGTCTGGCCGTCCAACCACGAACT 38040 Score = 156 bits (172), Expect = 2e-33 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 2456 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 2515 ||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 36682 TGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCTT 36623 Query 2516 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 2575 || ||||||||||||||||| || | ||| ||||||||||| || |||| |||||||| Sbjct 36622 ATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCCT 36563 Query 2576 TCCCAGCAATCGTCGATTGTTATA 2599 | |||||| || |||||||| || Sbjct 36562 TTCCAGCAGCCGGCGATTGTTGTA 36539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203289912364810