Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 seq34 82.4 5e-11 >seq2 Length=17806784 Score = 118 bits (130), Expect = 7e-22 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || |||||||||||||||| | ||||| | ||||||||| ||||| Sbjct 3492031 TCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 3491972 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||| ||| || || || || || | ||| || || || ||| ||| | |||||| | Sbjct 3491971 ATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTAACATT 3491913 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| |||||| ||| || || | || || |||||||| || || ||||| || Sbjct 3491912 CTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAAC 3491853 Query 34695 AAAAATCTGCATGTTGA 34711 ||||||||||| |||| Sbjct 3491852 GAAAATCTGCATCTTGA 3491836 Score = 118 bits (130), Expect = 7e-22 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || |||||||||||||||| | ||||| | ||||||||| ||||| Sbjct 3493146 TCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 3493087 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||| ||| || || || || || | ||| || || || ||| ||| | |||||| | Sbjct 3493086 ATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTAACATT 3493028 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| |||||| ||| || || | || || |||||||| || || ||||| || Sbjct 3493027 CTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAAC 3492968 Query 34695 AAAAATCTGCATGTTGA 34711 ||||||||||| |||| Sbjct 3492967 GAAAATCTGCATCTTGA 3492951 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | |||||| || || ||||| |||||||| || || Sbjct 3493410 CCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGAT 3493351 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||||||||||||||| || | ||| || || || || || Sbjct 3493350 AATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGA 3493291 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||| || || ||| ||| ||| | ||| || | ||| || || ||| || | Sbjct 3493290 ATTCCTTCTTTATCT-TGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCT-TCAA 3493233 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || |||||||| || || ||||| |||||||| ||||| Sbjct 3493232 CTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCAT 3493184 Score = 89.7 bits (98), Expect = 3e-13 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||||||||| || | ||| ||||| || || || | ||| || ||| Sbjct 3492223 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 3492164 Query 34612 TCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTA 34669 ||| |||| || | |||||| | ||| || || ||| || ||||||| || | Sbjct 3492163 TCTTGGATC-TTCGCTTTAACATTTTCAATAGTATCAGAAGCT-TCAACTTCCAACGTGA 3492106 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || ||||| ||||| |||||||| ||||| Sbjct 3492105 TGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCAT 3492069 >seq34 Length=1613596 Score = 82.4 bits (90), Expect = 5e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 |||||||| ||||| || || | || || |||||||||||||||| || ||||| ||| Sbjct 772944 TTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAATT 773003 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA 34638 || | ||||| || || || | || || || ||| ||||| ||| | | | Sbjct 773004 AATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTTCA 773063 Query 34639 ATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || ||| ||| || ||||| | ||| || || || || ||||| ||||| || || Sbjct 773064 ATCGTATCTGATGCT-TCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGAA 773122 Query 34698 AATCTGCAT 34706 || ||||| Sbjct 773123 GATTTGCAT 773131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720175520481