Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq64 1314 0.0 >seq64 Length=39090 Score = 1314 bits (1456), Expect = 0.0 Identities = 1089/1322 (82%), Gaps = 12/1322 (1%) Strand=Plus/Minus Query 32903 ATGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCAT 32962 |||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 11074 ATGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCT 11015 Query 32963 CGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCC 33022 || ||||||||||||||||| || | ||| ||||||||||| || |||| ||||||| Sbjct 11014 TATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCC 10955 Query 33023 TTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTT 33082 || |||||| || || ||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct 10954 TTTCCAGCAGCCGGCGGTTGTTGTACCAGTCCACCCACGTCAGTGTCGCCAGCTCCACTT 10895 Query 33083 CTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGC 33142 | || ||| |||||||||| ||||| ||||| ||||||||||||||||| || ||||||| Sbjct 10894 CGGCGCGGGTTTTCCAGCTTTTACGATGTATAACCTCCGCTTTGTAAAGTCCGTTGATGC 10835 Query 33143 TCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGG 33202 |||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || | Sbjct 10834 TCTCTGCCATTGCGTTGTCATATGAGTCGCCGGTGCTGCCCGTTGATGCCAGCAGCCCTG 10775 Query 33203 CTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT 33262 | || || || || | ||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 10774 CGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACATACTGAGAGCCTTTATCGCTGTGAT 10715 Query 33263 GGATGGTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAAT 33321 ||||||| || ||||| ||| | ||||||||| ||||||||| |||||||||| ||||| Sbjct 10714 GGATGGTCCC-GACGGGACGTCTGGCCCACAATGCCTGCTCCGGCGCATCCAGTACGAAC 10656 Query 33322 GTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATG 33381 || |||||||| ||||||||||||||||| ||||||||| ||||| |||||||| ||| Sbjct 10655 GTTGTTTCCATCGACGATGAGACCCGCCATCCCACGATGCGACCGGCGAACACATCGATG 10596 Query 33382 ATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCAC 33441 || ||||||||||| ||||||||||| | |||||||| | |||||||||||||||||| Sbjct 10595 ATGAACGCCACATACGCGAAGCCCTGCAAGGTGCTGACACAGGTAAAATCAGCCACCCAC 10536 Query 33442 AGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCT 33501 ||||||||||| ||||| ||||||||||| ||||| || ||||| |||| ||| | || Sbjct 10535 AGCTGGTCAGGCCGTTCGGCCACGAACTGGCGGTTCACACGGTCATCTGCAGCAGCCTCT 10476 Query 33502 TTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACC 33561 || ||||||| ||| || || |||||||| |||||| | || || || | ||||| || Sbjct 10475 TTACGGCTGACGGTGGTTCGTACCTTTTTGCCCCGGCGTACCCCTGCCCGCCCCATCGCC 10416 Query 33562 GCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGC 33621 ||| || ||| |||| |||||||||||| | ||||| |||||| | |||||||||| Sbjct 10415 TTCATCAGCCGTTCCACGGTACATCTGGCCGCGCTGATGTGTTCCCGGAGCAACTGACGC 10356 Query 33622 CAGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTATACGCGCTGTATCTCTCT 33680 ||||| || || || || ||||| ||| || |||||||| || || ||||||||||| | Sbjct 10355 CAGACCTTGCGGACGCCATACACACTG-TGGTTTTCATCATACACACGCTGTATCTCCGT 10297 Query 33681 CTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATG-ATGTCGCTGTT 33739 |||||| || ||| |||| |||| | ||||| | |||||||| ||| || || | Sbjct 10296 TTTCAGCAGGTGGTCACGCTGTTCACGCGGGCTGCGCCTGTCCGGATGCATG-CGGTGGT 10238 Query 33740 GCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCC 33799 ||||| | ||||||| || |||||||| |||| |||||| ||||||||||||||||| Sbjct 10237 GCTGATACCGGTAATATGTCGACGGGGCGATATCCAGTTCCTGGCATACCGGTCCGACCC 10178 Query 33800 CGTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTC 33859 | | || | |||||| |||||| ||| || ||||||||||||||||||||||||| Sbjct 10177 CATGCTCATTACGCAGGGTATCCACCAGAGGGGCTATTTTTTCCAGAGGCGGTCGAACTC 10118 Query 33860 CGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACG 33919 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 10117 CGCCTTCGCAAAATAAGCGGAAGCCTGTCGCAGGATATCGTTACTGCGGCGCAGTTCGCG 10058 Query 33920 ATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACC 33979 ||||||||||||||||| || |||||||| ||||||| | ||||||| || || ||| Sbjct 10057 GTTTTCACGTTCCAGCTCCTTGAGACGCTGGCGTTCAGTGGTGGTGAGTCCGCCGTCA-- 10000 Query 33980 GCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCC 34039 |||| ||| || ||||||||||||| |||| || || |||||||| |||||||| Sbjct 9999 ----CCGGCATCACGTTCATGCTGGCGAAGCCAGGTGCGAAGCGTCTCCGGTGTACAGCC 9944 Query 34040 AATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTC 34099 || || ||||| | || | || || ||||| ||||||||||| || | ||| | ||| Sbjct 9943 GATTTTGGGGGCGACAGAGCTGATGGCAGCCCATTGTGAGTCATAGTCGTTCTGGCCTTC 9884 Query 34100 CAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCAT 34159 | ||||| ||||| |||||||||||||| || |||||||| || |||||||||||||| Sbjct 9883 GATAACCAGACGAACGGCCCGCTGACGGACCTCAGGGGAAAAGCGCGTATTTTTAGTCAT 9824 Query 34160 CCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCATGATGA 34219 ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| ||| | Sbjct 9823 CCTGTTTACCTCTCTCTCAAAGAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAGGATTA 9764 Query 34220 CC 34221 || Sbjct 9763 CC 9762 Score = 504 bits (558), Expect = 3e-138 Identities = 431/531 (81%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 32939 TGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTT 32998 || |||||||||||||||||||| ||||| | |||||||| ||||| || |||||||| Sbjct 38559 TGGGAACTCAGGCTGCCAGATCACCGTTTACAATGGAAGCGTAATATGCCAGTTCTGCTT 38500 Query 32999 CTGCCGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCC 33058 |||| || || |||| ||| ||||| |||||| || |||||||| ||||||||||||| Sbjct 38499 CTGCTGGCGGGATATGCCCCGGCCTTTCCAGCAGCCGGCGATTGTTGTACCAGTCCACCC 38440 Query 33059 ACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCT 33118 ||| |||| |||||||| || ||||||||||| |||| |||||||| |||| Sbjct 38439 ACG---------CCAGCTCCACTTCGGCGCGGTTTTTCCATTTCTTGCGGTGTATCACCT 38389 Query 33119 CCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTAC 33178 | ||||| ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| | Sbjct 38388 CTGCTTTATAAAGGCCATTGATACTCTCTGCCATTGCGTTGTCGTATGAGTCGCCTGTGC 38329 Query 33179 TCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACAT 33238 |||| ||||||||||||| || || || || || || | ||| || ||||| ||||||| Sbjct 38328 TCCC-GTTGATGCCAGTAGCCCTGCGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACAT 38270 Query 33239 ACTGAGAGCCTTTATCGCTGTGATGGATGGTGCCAGACGGACGACGGGCCCACAACGCCT 33298 |||| ||||||||||| ||||||||| || || | ||| || |||||||||||||||| Sbjct 38269 ACTGCGAGCCTTTATCTGAGTGATGGATAGTTCCTGCCGGCCGTCGGGCCCACAACGCCT 38210 Query 33299 GCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGA 33358 ||||| |||| ||||| ||||| ||||||||||| || || || ||||| || ||||||| Sbjct 38209 GCTCCGGCGCGTCCAGTACGAACGTCGTTTCCATCGATGACGACACCCG-CAGCCCACGA 38151 Query 33359 TGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 33418 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||||| Sbjct 38150 TACGACCCGCGAACACGTCGATGATGAACGCCACATAAGCAAAGCCCTGCCAGGTGCTGA 38091 Query 33419 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACT 33469 |||| || || || ||||||||||||||||| || ||| | ||||||||| Sbjct 38090 CGTACGTGAAGTCTGCCACCCACAGCTGGTCTGGCCGTCCAACCACGAACT 38040 Score = 156 bits (172), Expect = 2e-33 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963 ||||||||||||| ||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 36682 TGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCTT 36623 Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023 || ||||||||||||||||| || | ||| ||||||||||| || |||| |||||||| Sbjct 36622 ATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCCT 36563 Query 33024 TCCCAGCAATCGTCGATTGTTATA 33047 | |||||| || |||||||| || Sbjct 36562 TTCCAGCAGCCGGCGATTGTTGTA 36539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210924883731132