Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq64 416 7e-112 >seq64 Length=39090 Score = 416 bits (460), Expect = 7e-112 Identities = 733/1051 (70%), Gaps = 23/1051 (2%) Strand=Plus/Minus Query 16966 CATTGGGCTGTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCT 17025 || |||| ||||||||||||||| || ||||||||||| || ||| | ||||| | | Sbjct 36294 CACTGGGAGGTTATCCCAGCAGTTGCCCCGCCGACTCATGCTTTGCTTTATCCGACAGCG 36235 Query 17026 CCACAGTAACTGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACAT 17085 ||||||| ||||| | | | ||| |||||||| || || || || ||||||||||| Sbjct 36234 CCACAGTGCTTGCCGATATTTGCGGCTGGTATAATGGCTACCCTGGTCACTGTGGAACAT 36175 Query 17086 CACCCC-GACGGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCC 17144 || || | |||| ||| || | ||||| ||||| | || ||||| | || || Sbjct 36174 TACGCCTGTTGGGCG-ACCTCGCATCTCCCAGGCCATCTGCAACGCTTTGACCGTCAG-- 36118 Query 17145 TGCTG--TCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAG 17202 ||| | |||||| | ||||||| |||||||||| ||||| | |||||||| || || Sbjct 36117 TGCCGAGTCCGGCAACGTCGACATGACCCAGCCCACCGGTTTACGGGCGAACAGATCCAG 36058 Query 17203 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 17262 || || || || || ||||||| || || ||||||||| |||||||||| || ||||| Sbjct 36057 CACCACCGCCAGATAAGCCCAGCATTTGCCTGTCCAGATACAGGTCACATCGCCACACCA 35998 Query 17263 CACCTGATTTGGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 17322 ||||| | ||| || || || |||||||| || | || | || | || |||| || Sbjct 35997 GACCTGGTCTGGTTCTGTGACCGCGAACTGGCGGTTGAGATGATTCTGTATTTCAACGTG 35938 Query 17323 TTCATGACCACCACGTTTATACCGGTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 17382 || | ||| ||||| | ||| || || || | |||||||| | | |||||||| Sbjct 35937 CTCGTTACCGCCACGCCTGTACTTGTGGGTGGGTACCAGACAGCTGGCGATGCCCAGCTC 35878 Query 17383 TTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTGGTAGCCTCT---CTGGGTTGCCAT 17439 |||| || | || || |||||||||||||| | | || | | || | | || Sbjct 35877 AGTCATCAGCTTACCGGCCAGCCAGCGCCCCATTTTGACACCGGTGTCCCGGATAACGAT 35818 Query 17440 TGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGCTG--ATGCCATGCAGTTCAAGTACC 17497 | |||||||||| || |||||||| || ||| | ||| || || | ||| Sbjct 35817 GCTCGCGATGCTTCGGGCGCCGGCAGAACCTCCACTGGCGTTCCAGGC--CTCCATGACC 35760 Query 17498 TGGCTGCG-TAATACAGCCCGTCTGCCGTCTGGCTTTTCAGGACG-GTTTTTCCAGTATT 17555 |||||||| | | || | || ||||||||| | | || || | ||||| Sbjct 35759 TGGCTGCGTTTAGTCA-CGCGCTCCCCGTCTGGC-TCACTGGCCGAAGCCTGCCAGTGCC 35702 Query 17556 TGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGCCACAGGATAACGCGCCC 17615 |||||||||||||||| ||| || |||| || || | || || || ||||||| Sbjct 35701 TGTAGCTGCTGCGATGTACCTTAAAGGTCAGGCACAGGGTCGTAACCGGGTATCGCGCCC 35642 Query 17616 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 17675 | || | ||| |||| |||| ||| || ||||| ||||| |||||||| |||||||| Sbjct 35641 TCAGCCTGTCGACTATCATGAACCGTTGAGTGAGTCCGACATTAAGAGCGCCGTAGCCTT 35582 Query 17676 TTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 17735 |||||||||||| ||||||||||||| ||||||| |||||| | | |||||| | || Sbjct 35581 TTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTATTTTTTTCTTCATCTCACGCAGCTC 35522 Query 17736 AATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTA 17794 || || || ||||| | | || || | || ||||| || || ||||| | | Sbjct 35521 AAGCTGCTCAGGGGTGA-GAGGAAGCCCCGCAGGGGTTTTACCTTGTCGCTCCAGCCTGA 35463 Query 17795 ATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTG 17854 || || ||||| || |||| | |||| ||| ||||| | || ||| || | Sbjct 35462 GTTTATTGACCCAGCGAGTCAGAGCGGAATGGCTGACATTAACCGCTTCGGCGGCCTTAA 35403 Query 17855 CCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGA 17914 | | ||||| ||||| || ||||||| || | |||| | ||||| || || ||| Sbjct 35402 CAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCGTGA 35343 Query 17915 AATTTCtttttttCATTATGGCACCTGTGTTGTTCT-GAGGTGAGCATATCACCTCTGTT 17973 ||| ||| |||| ||||||| |||| | ||||||||||||||||||| | | Sbjct 35342 AAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCCGAT 35286 Query 17974 CAGGTGGCCAAATTCAGTAAACCACTTCAAT 18004 |||||||||| ||||| ||||| |||| Sbjct 35285 CAGGTGGCCAGTATCAGTGTGCCACTACAAT 35255 Score = 412 bits (456), Expect = 9e-111 Identities = 731/1049 (70%), Gaps = 23/1049 (2%) Strand=Plus/Minus Query 39591 CATTGGGCTGTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCT 39650 || |||| ||||||||||||||| || ||||||||||| || ||| | ||||| | | Sbjct 36294 CACTGGGAGGTTATCCCAGCAGTTGCCCCGCCGACTCATGCTTTGCTTTATCCGACAGCG 36235 Query 39651 CCACAGTAACTGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACAT 39710 ||||||| ||||| | | | ||| |||||||| || || || || ||||||||||| Sbjct 36234 CCACAGTGCTTGCCGATATTTGCGGCTGGTATAATGGCTACCCTGGTCACTGTGGAACAT 36175 Query 39711 CACCCC-GACGGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCC 39769 || || | |||| ||| || | ||||| ||||| | || ||||| | || || Sbjct 36174 TACGCCTGTTGGGCG-ACCTCGCATCTCCCAGGCCATCTGCAACGCTTTGACCGTCAG-- 36118 Query 39770 TGCTG--TCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAG 39827 ||| | |||||| | ||||||| |||||||||| ||||| | |||||||| || || Sbjct 36117 TGCCGAGTCCGGCAACGTCGACATGACCCAGCCCACCGGTTTACGGGCGAACAGATCCAG 36058 Query 39828 AACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCA 39887 || || || || || ||||||| || || ||||||||| |||||||||| || ||||| Sbjct 36057 CACCACCGCCAGATAAGCCCAGCATTTGCCTGTCCAGATACAGGTCACATCGCCACACCA 35998 Query 39888 CACCTGATTTGGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 39947 ||||| | ||| || || || |||||||| || | || | || | || |||| || Sbjct 35997 GACCTGGTCTGGTTCTGTGACCGCGAACTGGCGGTTGAGATGATTCTGTATTTCAACGTG 35938 Query 39948 TTCATGACCACCACGTTTATACCGGTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTC 40007 || | ||| ||||| | ||| || || || | |||||||| | | |||||||| Sbjct 35937 CTCGTTACCGCCACGCCTGTACTTGTGGGTGGGTACCAGACAGCTGGCGATGCCCAGCTC 35878 Query 40008 TTTCATGAGTCTGCCAGCAAGCCAGCGCCCCATCTGGTAGCCTCT---CTGGGTTGCCAT 40064 |||| || | || || |||||||||||||| | | || | | || | | || Sbjct 35877 AGTCATCAGCTTACCGGCCAGCCAGCGCCCCATTTTGACACCGGTGTCCCGGATAACGAT 35818 Query 40065 TGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTGGCTG--ATGCCATGCAGTTCAAGTACC 40122 | |||||||||| || |||||||| || ||| | ||| || || | ||| Sbjct 35817 GCTCGCGATGCTTCGGGCGCCGGCAGAACCTCCACTGGCGTTCCAGGC--CTCCATGACC 35760 Query 40123 TGGCTGCG-TAATACAGCCCGTCTGCCGTCTGGCTTTTCAGGACG-GTTTTTCCAGTATT 40180 |||||||| | | || | || ||||||||| | | || || | ||||| Sbjct 35759 TGGCTGCGTTTAGTCA-CGCGCTCCCCGTCTGGC-TCACTGGCCGAAGCCTGCCAGTGCC 35702 Query 40181 TGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAGAGTGGCCACAGGATAACGCGCCC 40240 |||||||||||||||| ||| || |||| || || | || || || ||||||| Sbjct 35701 TGTAGCTGCTGCGATGTACCTTAAAGGTCAGGCACAGGGTCGTAACCGGGTATCGCGCCC 35642 Query 40241 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 40300 | || | ||| |||| |||| ||| || ||||| ||||| |||||||| |||||||| Sbjct 35641 TCAGCCTGTCGACTATCATGAACCGTTGAGTGAGTCCGACATTAAGAGCGCCGTAGCCTT 35582 Query 40301 TTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 40360 |||||||||||| ||||||||||||| ||||||| |||||| | | |||||| | || Sbjct 35581 TTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTATTTTTTTCTTCATCTCACGCAGCTC 35522 Query 40361 AATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTA 40419 || || || ||||| | | || || | || ||||| || || ||||| | | Sbjct 35521 AAGCTGCTCAGGGGTGA-GAGGAAGCCCCGCAGGGGTTTTACCTTGTCGCTCCAGCCTGA 35463 Query 40420 ATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTG 40479 || || ||||| || |||| | |||| ||| ||||| | || ||| || | Sbjct 35462 GTTTATTGACCCAGCGAGTCAGAGCGGAATGGCTGACATTAACCGCTTCGGCGGCCTTAA 35403 Query 40480 CCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGA 40539 | | ||||| ||||| || ||||||| || | |||| | ||||| || || ||| Sbjct 35402 CAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCGTGA 35343 Query 40540 AATTTCtttttttCATTATGGCACCTGTGTTGTTCT-GAGGTGAGCATATCACCTCTGTT 40598 ||| ||| |||| ||||||| |||| | ||||||||||||||||||| | | Sbjct 35342 AAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCCGAT 35286 Query 40599 CAGGTGGCCAAATTCAGTAAACCACTTCA 40627 |||||||||| ||||| ||||| || Sbjct 35285 CAGGTGGCCAGTATCAGTGTGCCACTACA 35257 Score = 80.6 bits (88), Expect = 7e-11 Identities = 103/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 17869 TGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTTCtttttttC 17928 ||||| || ||||||| || | |||| | ||||| || || |||||| | || | Sbjct 17482 TGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCGTGAAATGT---TTAGCC 17426 Query 17929 ATTATGGCACCTGTGTTGTTCTG-AGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATT 17987 ||| ||||||| |||| || |||||||||||||||||| | ||||||||||| | Sbjct 17425 ATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCCGATCAGGTGGCCAGTAT 17366 Query 17988 CAGTAAACCACTTCAATTCA 18007 |||| ||||| || |||| Sbjct 17365 CAGTGTGCCACTACAGTTCA 17346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132156143984200