Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq450 138 2e-28 seq781 96.9 7e-16 >seq450 Length=1262 Score = 138 bits (152), Expect = 2e-28 Identities = 245/355 (69%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 248 CAGTGCGTAAGGGTTGAAGCGCACCACGTCGATCCCCAGCCAGTCGTTTAACTCTTTCA- 306 || |||||||||||||||||| | ||| || |||||||||||||| | | |||| Sbjct 338 CAATGCGTAAGGGTTGAAGCGAATCACCTCCTCACCCAGCCAGTCGTTAAGATGCTTCAT 397 Query 307 GGCTTTCTTGTATCGGGGCCAGTTCGTTGATGGAAAACACCTTCGCCGCTTTCTCTACGT 366 ||||| | || | || | ||| ||||||| || ||||| ||||||||||| | | Sbjct 398 GGCTTCCATGCAG-GGTGTCAGCTCGTTGACGGCTAACACGCGGGCCGCTTTCTCAATAT 456 Query 367 CGCCGAAGCCACCGGAGTTATTCGGCATTACCCCCATCAGAACGGGCGGCACACGGTGCG 426 | ||||| |||| | ||| || | |||||||| ||||| || ||||||| Sbjct 457 CACCGAATGAACCGTTCCCTTCCGGAATGGCGCCCATCAGTTGCGGCGGTACCCGGTGCG 516 Query 427 CGGCTAACAGGTCGTCGCGGGTGGCGTCTTTGATGCCGGTAAACTCATCCTTCGCCGCCA 486 | || | || ||| |||||||||| || | || |||||||||||| |||| | Sbjct 517 CTGCCAGCATGTCATCGCGGGTGGAAGACTTCACCCCCACAAACTCATCCTTAGCCGATA 576 Query 487 CCTGGCTGAACGGCATAATTTGCAGGCCGTCTTTTTTCCCGCCCGCCGCGTAGACAAACA 546 ||||||||| |||| ||||||| | ||||||| ||| | || | | || | Sbjct 577 TCTGGCTGAATGGCAGTATTTGCACGGCGTCTTTGCCGCCGTTAGGTGCCTGCAGAAGGA 636 Query 547 GGTTTTTAAAAGCACCGTTGCCGCGAGCATCTTTCAGCGACTTTTTAAGCTTTTC 601 || ||||| |||||| ||| || ||| |||| |||||| ||||| || Sbjct 637 TGTCCTTAAACGCACCGCTGCGCCGGATATCCGCCAGCTTCTTTTTGAGCTTATC 691 >seq781 Length=846 Score = 96.9 bits (106), Expect = 7e-16 Identities = 201/291 (69%), Gaps = 24/291 (8%) Strand=Plus/Minus Query 26903 GCTGCGCAATTTCTCTATCTGAACCGCCATTGTTATAACGGT--GTTTGCCGTTACAGCG 26960 || ||| | || || |||||||| |||||| | ||||||||| || | ||||| | Sbjct 706 GCCGCGTATTTCCTGTATCTGAATCGCCATGGCTATAACGGTCTGTATCGCGTTAA--CC 649 Query 26961 AGAAGACCGGCTTTAACGTGCCTTTTGGCAAGTATAA-GAACGTCTACTTTCCTGAAAAT 27019 ||||| || || ||||| || || || |||||| || | | |||||||||||| Sbjct 648 AGAAGGGCGAATTCAACGTTCCATTCGGTAAGTATGCCGAGCCT-TACTTTCCTGAAGCG 590 Query 27020 GAAATCCGCTTGTTTGCCGAAAAGGCCAACGATACAAAGGCGATAT---TCCTTTGTG-- 27074 ||||| ||||| || ||||||||||||| ||| ||||| ||| | | ||| | ||| Sbjct 589 GAAATGCGCTTATTCGCCGAAAAGGCCAGCGACACAAAAGCGGTCTTTATCCATAGTGAT 530 Query 27075 ---CGCCGTTCCAGCGTTCCCTACAGAT-TGTCACTGGCGGCGATGTTGCCG---TTTAC 27127 |||| || | ||||| | | || ||| ||| ||| || | |||| Sbjct 529 TTCCGCCAATCTA----TCCCTGATGTTATGCAACTCGCG--CATGACGCGGTGATTTAT 476 Query 27128 TGCGATCCGCCCTACCTGCCTGCGAGTAAAACAGCCAACTTTACCCAATAC 27178 || || |||||||| | ||||||||| | || ||||| || ||| | ||| Sbjct 475 TGTGACCCGCCCTATATCCCTGCGAGTGACACCGCCAATTTCACCGACTAC 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107104074946614