Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 >seq2 Length=17806784 Score = 102 bits (112), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| | || || ||| ||||||| | || || ||| | Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| || |||||||| |||| || Sbjct 3493243 CGATACTATTGAAAAT--GTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGAT 3493300 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| | ||||||||||| ||||||||||| || | | | | || ||||| || Sbjct 3493301 CAGCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTAT 3493360 Query 27967 AACATCCAAAAAGA 27980 |||||||||||||| Sbjct 3493361 AACATCCAAAAAGA 3493374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | || || ||| ||||| |||| |||||| || | Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAA-GCTTC 12207347 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| || || ||||||||||| |||| || Sbjct 12207346 GGACACAATAGAAAAT--GTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGAC 12207289 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||| || || || |||||||| || | ||| | ||||||| ||| Sbjct 12207288 CAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTAC 12207229 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || ||| ||| | ||||||||| |||| || | || ||| Sbjct 12207228 AATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | || || ||| ||||| |||| |||||| || | Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAA-GCTTC 12207803 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| || || ||||||||||| |||| || Sbjct 12207802 GGACACAATAGAAAAT--GTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGAC 12207745 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | ||||| || || || |||||||| || | ||| | ||||||| ||| Sbjct 12207744 CAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTAC 12207685 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || ||| ||| | ||||||||| |||| || | || ||| Sbjct 12207684 AATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851743811639