Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 145 2e-29 >seq2 Length=17806784 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||||| ||||| || ||||| || || || | || || | | Sbjct 12209012 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12209071 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||| || ||||| || || || || |||||||| |||| ||||| Sbjct 12209072 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12209131 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || || ||||| || ||||| || ||| || || ||||| Sbjct 12209132 TTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTA 12209191 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||||||||| | |||||| Sbjct 12209192 ATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || || || || ||||||||||||||||| || | | || Sbjct 3493405 ACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGT 3493346 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||||| || || || || || || || ||||| || || || |||| ||| Sbjct 3493345 TCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCC 3493286 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || || || |||||| ||||| || || || || |||||| || || Sbjct 3493285 TTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAG 3493226 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || | || || ||||| | |||||| Sbjct 3493225 TGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 210951 GTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 || ||||||||||||| || || || || || || || |||||||| || || |||| | Sbjct 3492232 GTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATT 3492173 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| ||||| |||||||| ||| || ||||| || || ||||| |||||| || Sbjct 3492172 CCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCC 3492113 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || || || | || || ||||| | |||||| Sbjct 3492112 AACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159115509532805