Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 7e-11 >seq2 Length=17806784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/154 (72%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||||||||| | || | |||||||| || || ||| || Sbjct 12207162 TAACGAAAATTTG--CATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTT 12207219 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| || |||| || || ||| | || || | || || || || || || || Sbjct 12207220 CTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAG 12207279 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||||||| | ||| | || ||||||||| Sbjct 12207280 ACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 12207313 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/154 (72%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||||||||| | || | |||||||| || || ||| || Sbjct 12207618 TAACGAAAATTTG--CATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTT 12207675 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| || |||| || || ||| | || || | || || || || || || || Sbjct 12207676 CTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAG 12207735 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||||||| | ||| | || ||||||||| Sbjct 12207736 ACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 12207769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532737391241