Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 120 2e-22 seq34 96.9 2e-15 >seq2 Length=17806784 Score = 120 bits (132), Expect = 2e-22 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||||||||||||| | || || ||||| || ||||| || || || | Sbjct 3491838 AAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCA 3491897 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| ||||| | ||||| || |||||||| | || ||||| Sbjct 3491898 TCAGACACCATTGAGAATGTTAAAGC-CAAAATCCAGGATAAAGAAGGAATTCCCCCAGA 3491956 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGAT 23784 ||| || ||| |||| ||||| || |||||| | ||||| | | |||||| ||| Sbjct 3491957 TCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTT--CAGAT 3492014 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || ||||| || || ||||| ||| | ||| Sbjct 3492015 TACAATATTCAAAAGGAATCAACATTGCATCTTGTT 3492050 Score = 120 bits (132), Expect = 2e-22 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||||||||||||| | || || ||||| || ||||| || || || | Sbjct 3492953 AAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCA 3493012 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| ||||| | ||||| || |||||||| | || ||||| Sbjct 3493013 TCAGACACCATTGAGAATGTTAAAGC-CAAAATCCAGGATAAAGAAGGAATTCCCCCAGA 3493071 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGAT 23784 ||| || ||| |||| ||||| || |||||| | ||||| | | |||||| ||| Sbjct 3493072 TCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTT--CAGAT 3493129 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| || ||||| || || ||||| ||| | ||| Sbjct 3493130 TACAATATTCAAAAGGAATCAACATTGCATCTTGTT 3493165 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12207177 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207118 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| || |||||||| | || ||||| || Sbjct 12207117 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCAG 12207058 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| ||||| || || | ||| |||||| || ||||| Sbjct 12207057 CAGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAAT 12206998 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || | || ||||| | | ||| |||| ||| Sbjct 12206997 ATCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGGA 12206950 Score = 109 bits (120), Expect = 4e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||||||| | || || ||||| ||||| | |||||||| | | Sbjct 3492068 AATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTC 3492127 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||||| | ||||| | || | | ||||||||||| | || ||||||| Sbjct 3492128 TGATACTATTGAAAATGTTAAAGCGAAGA-TCCAAGACAAAGAAGGAATTCCACCAGATC 3492186 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||| ||| | || |||||||| |||||| ||||||| Sbjct 3492187 AACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGA 3492223 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12207633 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207574 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12207573 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207514 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12207513 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207454 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12207453 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207407 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12208089 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208030 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12208029 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207970 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12207969 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207910 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12207909 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207863 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12208317 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208258 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12208257 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208198 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12208197 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208138 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12208137 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208091 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12208545 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208486 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12208485 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208426 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12208425 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208366 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12208365 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208319 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12208773 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208714 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12208713 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208654 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12208653 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208594 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12208593 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208547 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12209001 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208942 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12208941 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208882 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12208881 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208822 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | || || ||||||| Sbjct 12208821 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208775 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207346 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12207345 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207286 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12207285 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207226 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | | || ||||||| Sbjct 12207225 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207179 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || ||||| || ||||| ||||| || | || Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207802 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || ||| ||||||||||| | || || || || Sbjct 12207801 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207742 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || ||| |||| || | ||| ||| | ||| ||||| Sbjct 12207741 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207682 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||||| ||| | | || ||||||| Sbjct 12207681 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207635 >seq34 Length=1613596 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||||||||| | || || || || || || || ||||| || | | Sbjct 773132 AATGCAAATCTTCGTTAAAACTTTAACAGGGAAGACTATTACCCTAGAAGTAGAAGCATC 773073 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||| || || || |||||||| | || |||||||| Sbjct 773072 AGATACGATTGAAAATGTGAAAGCTAAGATACAAGATAAAGAAGGCATCCCTCCAGATCA 773013 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||||| ||||||| || |||||| || || || Sbjct 773012 ACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGACGGTCGTACTTTATCTGACTATAA 772953 Query 23790 CATACAAAAAG 23800 || ||||||| Sbjct 772952 TATTCAAAAAG 772942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999478408156