Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 127 5e-24 seq86 98.7 2e-15 seq13 87.8 4e-12 seq1559 84.2 5e-11 seq31 84.2 5e-11 >seq2 Length=17806784 Score = 127 bits (140), Expect = 5e-24 Identities = 164/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| ||||| || ||||||||||||| || || |||| || || Sbjct 3493405 ACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGT 3493346 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || || || || || || ||||| || || || ||||| || Sbjct 3493345 TCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCC 3493286 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || |||||| ||| || || || || | ||| || || | Sbjct 3493285 TTCTTTATCTTGAAT-TTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCA 3493227 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | ||||||| Sbjct 3493226 GTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 125 bits (138), Expect = 2e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || | || ||||| ||||| | ||||||||| | | || Sbjct 3492062 ACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGT 3492003 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||||| || || ||||| ||||| || ||||| || || || ||||| || Sbjct 3492002 TCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCC 3491943 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || || ||||| ||| |||| | || || ||||||||||| | || || || | Sbjct 3491942 TTCTTTATCCTGGAT-TTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAA 3491884 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || ||||| ||||| | ||| | ||||| || Sbjct 3491883 GAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838 Score = 125 bits (138), Expect = 2e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || | || ||||| ||||| | ||||||||| | | || Sbjct 3493177 ACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGT 3493118 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||||| || || ||||| ||||| || ||||| || || || ||||| || Sbjct 3493117 TCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCC 3493058 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || || ||||| ||| |||| | || || ||||||||||| | || || || | Sbjct 3493057 TTCTTTATCCTGGAT-TTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAA 3492999 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || ||||| ||||| | ||| | ||||| || Sbjct 3492998 GAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||||| |||||||| | || || || || || || || |||||||| || || ||||| Sbjct 3492232 GTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATT 3492173 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||| |||||||||||||| || ||| ||| || || || || | ||| || || Sbjct 3492172 CCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCC 3492113 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| || ||||| || || ||||| | || | ||||||| Sbjct 3492112 AACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq86 Length=9336 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 |||| | || | ||||| | |||| ||||| |||||| ||||||| | || | || Sbjct 2348 TATTGTAACTTCTCATGCAATAATTATAATTTTTTTTTTTATTATGCCTATAATATTTGG 2289 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 || || ||||||| || ||||||||||| | || ||||| ||||| || ||||| | Sbjct 2288 GGGGTTTGGAAATTATTTAGTTCCTTTAATATTAGGAGCTCCAGATATAGCATTTCCTCG 2229 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || |||||||| ||||| |||||||| ||| Sbjct 2228 AATAAATAATATAAGATTTTGGTTACTACCTCCT 2195 Score = 87.8 bits (96), Expect = 4e-12 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 ||||||||| ||||||||||| ||||||||||| ||||| || || || || || || Sbjct 1797 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGGAATAAA--ATTGGGTC-CCCCCACCA 1853 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 || ||||||||||| |||||||||||||| |||| Sbjct 1854 GAAGGATCAAAAAAAGAAGTATTAAAATTTCGATCA 1889 >seq13 Length=8037603 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || || || ||||| ||||| ||||| || || || ||||| || ||||| || Sbjct 3215466 AAGATCTGTCCGTCTGTAATGGAGATGACATTAGTGGGAATGTAAGCTGACACATCGCCG 3215407 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||||| ||||||||||| || || || || ||||||| Sbjct 3215406 GCTTGAGTTTCGATGACAGGTAAGGCAGTGAGAGAGCCGCCACCAA 3215361 >seq1559 Length=396 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| |||||| ||||||| | || | | || || ||||||| || ||||||||||| Sbjct 396 TTTTTTTTTTATTATGCCTATAATATTTGAGGGGTTTGGAAATTATTTAGTTCCTTTAAT 337 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || ||||| ||||| || ||||| | | || |||||||| ||||| |||||||| Sbjct 336 ATTAGGAGCTCCAGATATAGCATTTCCTCGAATAAATAATATAAGATTTTGGTTACTACC 277 Query 7716 GCCT 7719 ||| Sbjct 276 TCCT 273 >seq31 Length=2051873 Score = 84.2 bits (92), Expect = 5e-11 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 370668 ATAAT--TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCC 370725 ||||| ||| ||||||||||||| || |||||||||||| | | |||||||| || || Sbjct 1786056 ATAATCCTCAAGATGACCAAAAAACCAAAATAAATGTTGAAATAAAATAGGATCACCACC 1786115 Query 370726 GCCTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 || || |||| |||||| |||||||||||| | |||| Sbjct 1786116 CCCAGA-GGATAAAAAAAAGAAGTATTAAAATTACGATCA 1786154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192493658745158