Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=17806784 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||| |||||||| ||||||||||||||||| | | ||| | |||||| |||||| Sbjct 3492043 TGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGT 3491984 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || || ||| | || || | ||| || ||| ||| | |||||||| || ||||| Sbjct 3491983 TTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTG 3491924 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 ||| |||| | | || |||| | | | || | ||||||||||| || ||| Sbjct 3491923 GCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTC 3491864 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 || ||||||| ||||| ||||| Sbjct 3491863 AAGGTTTTAACGAAAATCTGCAT 3491841 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||| |||||||| ||||||||||||||||| | | ||| | |||||| |||||| Sbjct 3493158 TGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGT 3493099 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 || || ||| | || || | ||| || ||| ||| | |||||||| || ||||| Sbjct 3493098 TTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTG 3493039 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 ||| |||| | | || |||| | | | || | ||||||||||| || ||| Sbjct 3493038 GCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTC 3492979 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 || ||||||| ||||| ||||| Sbjct 3492978 AAGGTTTTAACGAAAATCTGCAT 3492956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409648532835363