Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq223 170 1e-37 >seq223 Length=2082 Score = 170 bits (188), Expect = 1e-37 Identities = 301/433 (70%), Gaps = 12/433 (3%) Strand=Plus/Minus Query 78737 AACACCGCGGACGTGATCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATC 78796 |||||||| || |||| ||| | || || || || ||||| || || ||||| ||||| Sbjct 2081 AACACCGCCGATTTGATTCGGCTCATCATTCGCGATGAAGCGGTGCACGGGTATTACATT 2022 Query 78797 GGATACAAGTACCAGCGAGGCCTCGAGACC--CAGGGGCCGGCGCGGCAGGCTGAGCTCA 78854 || || ||||| ||| ||| || |||| ||| | |||| || | ||||| | Sbjct 2021 GGCTATAAGTATCAGAAAGGGCTGGAGAAAGTCAGCGA--GGCGAAGCGCGAGGAGCTTA 1964 Query 78855 AGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGA-CTACACCGAG 78913 | | | | ||||| |||| ||| || |||||||||||| ||| ||| || ||| Sbjct 1963 AAGGCTTTGCACTCGATTTGCTGATGGATCTGTACGACAACGAGC-TGAGCTATACGGAG 1905 Query 78914 CAGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAG---TTCCTGCGCTACAAC 78970 | ||||| | || | ||| | ||||| | | |||| ||||| |||||||| Sbjct 1904 GAACTCTACGCCGGCACCGG---CTGGGAGGACGACGTGAAGGCTTTCCTCTGCTACAAC 1848 Query 78971 GGCAACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATG 79030 | ||||||||||||||||||||| |||||||| || || ||||| ||| | | | Sbjct 1847 GCCAACAAGGCGCTGATGAACCTGGGCTACGACGCGCTTTTCCCGCCGGAGATGGCGGAG 1788 Query 79031 GCAGACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTC 79090 | ||||||| || || | ||||| || || | |||||| |||||||| |||||| Sbjct 1787 GTGAACCCGGCGATTCTGGCTGCGCTGTCGCCCAATGCCGACGAAAACCACGATTTCTTC 1728 Query 79091 TCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGG 79150 || || || ||||| || || || |||||||| | | || | ||||| |||||| Sbjct 1727 TCGGGATCTGGCTCATCGTATGTGATGGGCAAAGCGGTGGAAACCGAGGATGAAGACTGG 1668 Query 79151 GACTTCTGATGAA 79163 || || | ||||| Sbjct 1667 GATTTTTAATGAA 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299312636908226