Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq720 132 5e-26 seq184 113 5e-20 >seq720 Length=915 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||||||||| ||||| | || || || ||||| |||||| ||||| ||||||||||| Sbjct 316 TTCAGTAAAGGTACGGGCGATAACGTCGCGCTGCTGTTCTGGAGTCAGTGAGTTAAAGCG 375 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 ||| ||||| ||||| || ||||| || | |||||||||||| || | || | || Sbjct 376 AACCGCATAGCCAGACACGCGGATGGTAAGTTGTGGGTATTTTTCTGGATGCTCAACGGC 435 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || | || | |||| || || ||||| ||||||||||||||||| ||||| || || Sbjct 436 ATCCATCAGCGTTTCGCGGCGCAGCACGTTTACGTTCAGGTGCTGACCACCTTCCACGCG 495 Query 52896 ------AGGCTGAACTGCGATATCAACTTCACG 52922 ||||| ||| | ||| ||||||||| Sbjct 496 CACTTCCGGCTGCACTTCCATAGGAACTTCACG 528 >seq184 Length=2459 Score = 113 bits (124), Expect = 5e-20 Identities = 85/99 (86%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 66395 AAATAAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTG 66454 |||| || |||||| |||| ||||||||||||| |||||||||||||||||||||||| Sbjct 2017 AAATGAAGTGGCACGCCCTGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTG 2076 Query 66455 CTCTATCCAGCTGAGCTAAGAGTGCATTAATTTG-GTGT 66492 ||||||||| |||||||||| | ||| | || || |||| Sbjct 2077 CTCTATCCAACTGAGCTAAGGGCGCACTGATATGCGTGT 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522099164536920