Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 165 1e-35 >seq8 Length=10932247 Score = 165 bits (182), Expect = 1e-35 Identities = 219/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 77031 TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC 77090 |||| ||||||| | | |||||| ||| || || || |||| ||| | || || Sbjct 3800474 TGAACGGAACCATTGTTAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTT 3800415 Query 77091 TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTA 77150 || || ||| || | | | |||||||||||| | ||||||||||| || | || | Sbjct 3800414 TCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGT 3800355 Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 | || || |||||||| || || ||||| | ||||||||| || || | |||||||| Sbjct 3800354 CTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCT 3800295 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 77270 |||||||| |||||||| || || | ||||| || | || ||||| | || ||| Sbjct 3800294 GTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATT 3800235 Query 77271 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTAT 77330 |||||||||| | |||||| ||||||||||| || | |||| ||| | ||||||| Sbjct 3800234 TTATCTTTTAAAGCACTCCAATTCCAAAGATCTGTTGGAATTACATTCCACATATCGTAT 3800175 Query 77331 TGTA 77334 |||| Sbjct 3800174 TGTA 3800171 Score = 131 bits (144), Expect = 2e-25 Identities = 196/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || |||||||| ||| | | ||| | ||| ||| | || || |||||||| ||||| Sbjct 3798202 CTTGACATTTGTTGACGTAAAGTACAAGCAGAAAAAAGAGTTGGCGATGCATGGGTAAAG 3798143 Query 78438 CATTTTTCAGAAAGTAGA-TTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || || ||| ||| | || || ||||| || | ||| | || | || || Sbjct 3798142 TATCGCTCTGAA-GTATAATTATACGTTTCTATCACCTTTTCGAGTTCTTCTCCGTGGAT 3798084 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 | ||||| || | ||| | |||||||||||| |||||||| || ||| ||||| Sbjct 3798083 AGCAACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTT 3798024 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 || ||||| | ||||||| |||||||| |||||||| || || ||| ||||| || Sbjct 3798023 TAATAAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATC 3797964 Query 78617 GTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 ||||||||| ||||||| | ||||||||||| ||| Sbjct 3797963 GTAAATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Score = 131 bits (144), Expect = 2e-25 Identities = 216/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || |||||||| || || ||||| ||||| || | ||||||| |||||| ||||| | | Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | | ||||||| ||||| || || ||||| | ||||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 ||||||||||| | ||| |||| | || || ||| |||||||||| |||| || | Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 | || |||| | |||| || || | || || || ||||| ||| | | Sbjct 3798478 GTACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAACT 3798419 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | || || | ||| |||||||| || || || || || || || || |||| | ||| Sbjct 3798418 AATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAGA 3798359 Query 78369 AGAAAACAGCTA 78380 || || || ||| Sbjct 3798358 AGGAAGCAACTA 3798347 Score = 127 bits (140), Expect = 3e-24 Identities = 222/319 (70%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||| || | |||||| || || | | ||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || ||||| |||| | |||| ||| ||||| || || || | ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 77644 AATCAAA---TCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 | ||| | | || || | |||||||||| || | ||| |||||||||| ||||| Sbjct 3799470 AGTCATACGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTAC 3799411 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || |||| | | |||||| | | ||||||||||||||||||| | Sbjct 3799410 ACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTTC 3799351 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 |||| || || ||||| | ||| || ||| | || | |||| || |||||||| || Sbjct 3799350 TGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGA-TCTTTATAAAGCATG 3799292 Query 77817 AACGGAGTCCCGGTTTCAA 77835 | ||||| || ||||||| Sbjct 3799291 TAAGGAGTACCAGTTTCAA 3799273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 ||||| | |||||| ||||| || |||| |||||| || ||||||||||| |||| || Sbjct 3797712 CTAAACACTTTTTTGGTTTCTTTATGTAAATTAGAAACTGCTATTCTTGCTGCTAATATG 3797653 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||| | ||||| || || || || | ||||||| ||||| |||| | Sbjct 3797652 GCATAATCTGCATGTTTCGTTGTCATTGTTGCAGAAGTTTCTGCAGCTAAGTTATCAAGT 3797593 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACT 78902 || | ||||||||| ||| ||| || || | |||||| Sbjct 3797592 TCCACAGTTGTGACTCCAGAATAAAGACCATTGATAACT 3797554 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| | ||||||||||||| ||| ||| ||||| | ||||||||| || Sbjct 3799011 TTCAAATTCCTGTCCCCAAACATCAGGCAAATTAGGACATTCGTGTGGGCACATTAAACT 3798952 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| ||||| | | ||||| || |||||| | |||||| ||||| | |||| ||| Sbjct 3798951 CCATATTCCATCATTCAAAACTCTTTCCATAAATAAATCAGGGATCCACAAAGCATAAAA 3798892 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || |||| | ||||| |||||| || ||| Sbjct 3798891 TAACTCTCTCGCTCTATTTTCTTCTTTACCT 3798861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 77381 TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT 77440 |||| ||| |||| ||| ||||| || ||||| ||||| ||||| | ||||| ||||| Sbjct 3799808 TTCTCTTTG-GCTATTTCGCAACTAGCCTCCAAAGCTCCATAATACAAAGTTTCAAAAAT 3799750 Query 77441 CTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGC 77500 | |||| || | || ||||| || ||||| |||||| | | | ||| || Sbjct 3799749 TTGAATATTAAGTTTCTGCGCTTCTTCGCTTTCAAATGGATAACCCATCAACAAAAATGC 3799690 Query 77501 ATCTGCTAATCCCTGAACTCCAATACCAAT 77530 ||| ||||||||||||| ||||||||| || Sbjct 3799689 ATCAGCTAATCCCTGAATTCCAATACCTAT 3799660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647464984480