Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8 178 2e-39 >seq8 Length=10932247 Score = 178 bits (196), Expect = 2e-39 Identities = 209/283 (74%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 75647 ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGA 75706 |||||| ||| || || || |||| ||| | ||||| ||||| ||| || | | | | Sbjct 3800453 ATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTTTCGGTCAAATCTTTTAATAAA 3800394 Query 75707 TGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTA 75766 ||||||||||||| ||||||||||| || | || | || || || |||||||| || Sbjct 3800393 TGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGTCTTGTATAGATATTACTCGTG 3800334 Query 75767 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGT 75826 || ||||| | ||||||||| || || | |||||||| || ||||| || ||||| || Sbjct 3800333 TAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCTGTAGAAGCTGTTGGCATTGGA 3800274 Query 75827 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 75886 || | ||||| || | || ||||| | || ||||||||||||| | ||||| Sbjct 3800273 GCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATTTTATCTTTTAAAGCACTCCAA 3800214 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTA 75929 | ||||||||||| ||| | |||| ||| | ||||||||||| Sbjct 3800213 TTCCAAAGATCTGTTGGAATTACATTCCACATATCGTATTGTA 3800171 Score = 150 bits (166), Expect = 3e-31 Identities = 227/319 (71%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||| || | |||||| || || | ||||||||| ||| || |||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| ||||| |||| | |||| | ||| ||||| || || || | ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 76239 AATCAAA---TTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 | ||| | |||| || | | ||||||||||||| ||| |||||||||| ||||| Sbjct 3799470 AGTCATACGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTAC 3799411 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || |||| | | | |||||| | | || || ||||||||||||| Sbjct 3799410 ACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTTC 3799351 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACA 76411 |||| || |||||||| | ||| || ||| |||||| |||| || |||||||| | Sbjct 3799350 TGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGA-TCTTTATAAAGCATG 3799292 Query 76412 AACGGAGTTCCAGTTTCAA 76430 | ||||| |||||||||| Sbjct 3799291 TAAGGAGTACCAGTTTCAA 3799273 Score = 134 bits (148), Expect = 2e-26 Identities = 217/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || |||||||| || || ||||| || || || | ||||||| |||||| ||||| | | Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | || |||| ||||| || || ||||| | ||||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 ||||||||||| | ||| |||| | ||| || ||| | |||||||| |||| || | Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 | || ||| | |||| || || | | || || || ||||| |||| | | Sbjct 3798478 GTACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAACT 3798419 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 | ||||| | ||| ||||| ||||| || || || || ||||| || |||| | ||| Sbjct 3798418 AATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAGA 3798359 Query 76964 AGAAAACAGCTA 76975 || || || ||| Sbjct 3798358 AGGAAGCAACTA 3798347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || |||||||| ||| | | ||| | ||| ||| | || || |||||||| || || Sbjct 3798202 CTTGACATTTGTTGACGTAAAGTACAAGCAGAAAAAAGAGTTGGCGATGCATGGGTAAAG 3798143 Query 77033 CATTTTTCAGAAAGTAGA-TTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || || ||| ||| | || || ||||| || || ||| | || | || || Sbjct 3798142 TATCGCTCTGAA-GTATAATTATACGTTTCTATCACCTTTTCGAGTTCTTCTCCGTGGAT 3798084 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 | || || || | ||| | |||||||||||| | ||| || || ||| ||||| Sbjct 3798083 AGCAACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTT 3798024 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 || ||||| | ||||||| |||||||| |||||||| || || ||| ||||| || Sbjct 3798023 TAATAAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATC 3797964 Query 77212 GTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 ||||||||| | ||||| | ||| || || | ||| Sbjct 3797963 GTAAATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| | ||||||||||||| |||| ||||||||| | || ||||| || Sbjct 3799011 TTCAAATTCCTGTCCCCAAACATCAGGCAAATTAGGACATTCGTGTGGGCACATTAAACT 3798952 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||||| | | ||| | || |||||| | |||||| ||||| | |||| ||| Sbjct 3798951 CCATATTCCATCATTCAAAACTCTTTCCATAAATAAATCAGGGATCCACAAAGCATAAAA 3798892 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || |||| | |||| |||||| || ||| Sbjct 3798891 TAACTCTCTCGCTCTATTTTCTTCTTTACCT 3798861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912504002240