Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq412 98.7 2e-15 seq282 93.3 7e-14 >seq412 Length=1338 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 375 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 434 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 435 AGTCAGAGGAGCCAAATTT 453 >seq282 Length=1752 Score = 93.3 bits (102), Expect = 7e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| ||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 1120 CTCTGTAGTTCAGTCGGTAGAACGCCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 1061 Query 5547 TGCCAGAGTCGCCACATTT 5565 | ||||| |||| |||| Sbjct 1060 AGTCAGAGGAGCCAAATTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770283541940120