Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 127 5e-24 >seq2 Length=17806784 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || || ||||| || |||||||| | | ||||| |||||| Sbjct 3492052 AGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCT 3491993 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| || | ||||| || | | |||||||| || || Sbjct 3491992 TCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCC 3491933 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| |||| | | ||||||| |||||| ||||||||||||||| Sbjct 3491932 TGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTT 3491873 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | || || ||||| | |||||| || Sbjct 3491872 TTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || || ||||| || |||||||| | | ||||| |||||| Sbjct 3493167 AGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCT 3493108 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| || | ||||| || | | |||||||| || || Sbjct 3493107 TCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCC 3493048 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| |||| | | ||||||| |||||| ||||||||||||||| Sbjct 3493047 TGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTT 3492988 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | || || ||||| | |||||| || Sbjct 3492987 TTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| |||||||| |||||||| ||||| || | |||||| | ||||| || || Sbjct 12206975 TGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGATAAAGTACGTCCATCCTCGAGTTGC 12207034 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| || | ||||||||| | | || ||||| || || ||||| || Sbjct 12207035 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTATCCTGAATCTTA 12207094 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | |||| |||| ||| || |||||||||||||| |||||||| || Sbjct 12207095 GCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTT 12207154 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| | ||||| Sbjct 12207155 AATGTCTTAACGAAAATTTGCAT 12207177 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12207413 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12207472 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12207473 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12207532 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12207533 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12207592 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12207593 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12207869 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12207928 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12207929 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12207988 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12207989 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12208048 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12208049 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12208097 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12208156 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12208157 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12208216 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12208217 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12208276 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12208277 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12208325 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12208384 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12208385 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12208444 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12208445 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12208504 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12208505 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12208553 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12208612 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12208613 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12208672 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12208673 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12208732 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12208733 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12208781 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12208840 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12208841 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12208900 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12208901 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12208960 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12208961 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || |||||||||||||| || |||| ||| ||||| |||||| Sbjct 3493395 AGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCT 3493336 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| || || || | ||||| || | | |||||||| || ||| Sbjct 3493335 TCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCT 3493276 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | | || ||| || ||||| || ||||||||| Sbjct 3493275 TGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTT 3493216 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | || || || || | |||||| Sbjct 3493215 TTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12207185 CTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12207244 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12207245 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12207304 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12207305 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12207364 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12207365 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12207641 CTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12207700 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12207701 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12207760 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | |||| |||| ||| || ||||||||| Sbjct 12207761 TCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGA 12207820 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || | ||||| ||||| | ||||| Sbjct 12207821 GTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||||||| ||||| || ||||| ||||| |||| | ||| Sbjct 12209009 CTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTA 12209068 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || ||||| || || | ||||||||| | | || ||| Sbjct 12209069 CGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCT 12209128 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || |||||| | |||| |||||||| || ||||||||| Sbjct 12209129 TCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGA 12209188 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || | ||||| || |||| |||||| Sbjct 12209189 GTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153784477360647