Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq1 96.9 7e-15 seq5 95.1 3e-14 seq39 89.7 1e-12 seq30 86.0 1e-11 >seq2 Length=17806784 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || ||||| | ||| ||||||||||||||| ||||| | Sbjct 3493410 CCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGAT 3493351 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | ||||| || | |||||| |||||||| || | |||||| || || ||| Sbjct 3493350 AATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGA 3493291 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || ||||| || || ||||| || | || ||||| || |||||||| ||| Sbjct 3493290 ATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACT 3493231 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || || ||||| ||||| || || || || || |||||| Sbjct 3493230 TCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||||| || | || | ||| || |||||||| |||||||||| Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| ||||| || || |||||||||| ||| || ||||| ||| Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || || ||||| || || || | || || |||||||||||||||||| Sbjct 12207071 ATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207130 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || || ||||||||||| || ||||| Sbjct 12207131 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12209039 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12209098 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| |||||||| || || || | Sbjct 12209099 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTT 12209158 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || Sbjct 12209159 TCTATTGTGTCTGAAGCTTCGACTTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACA 12209218 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 12209219 AAGATCTGCAT 12209229 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || || |||| ||| | || || || ||||| |||||||| | Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| || || || || |||| ||| || |||||| ||| Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || ||||| || || || | || || |||||||||||||||||| Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207358 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || || ||||||||||| || ||||| Sbjct 12207359 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || || |||| ||| | || || || ||||| |||||||| | Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| || || || || |||| ||| || |||||| ||| Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || ||||| || || || | || || |||||||||||||||||| Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207814 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || || ||||||||||| || ||||| Sbjct 12207815 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12207443 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12207502 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12207503 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12207562 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12207563 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12207622 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12207623 AAAATTTGCAT 12207633 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12207899 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12207958 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12207959 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12208018 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12208019 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12208078 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12208079 AAAATTTGCAT 12208089 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12208127 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12208186 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12208187 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12208246 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12208247 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12208306 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12208307 AAAATTTGCAT 12208317 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12208355 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12208414 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12208415 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12208474 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12208475 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12208534 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12208535 AAAATTTGCAT 12208545 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12208583 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12208642 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12208643 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12208702 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12208703 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12208762 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12208763 AAAATTTGCAT 12208773 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | || || || |||||||| | ||| || || || || Sbjct 12208811 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12208870 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || |||||| ||||| || || ||||| || ||||| || || || | Sbjct 12208871 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12208930 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||||||||||||| ||||| || || || || || || ||||||||| Sbjct 12208931 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12208990 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12208991 AAAATTTGCAT 12209001 Score = 120 bits (132), Expect = 6e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || | |||||| |||||||| || | ||||||||| || ||||| || || Sbjct 3492226 CCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCT 3492167 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||||||||||||| ||||| || | || ||||| || |||||||| ||||| | ||| Sbjct 3492166 TTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTG 3492107 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || || || || ||||| || || |||||| Sbjct 3492106 ATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq1 Length=27400720 Score = 96.9 bits (106), Expect = 7e-15 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 273778 TCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 ||||||||||||| | | ||| || ||||||||||| | ||||| || |||| Sbjct 5938135 TCGTGAAAATGTAACGAGGACTGGCGGAATCCTTGCCACCAACTAACCTCGTGCCGAACT 5938076 Query 273838 GACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCA 273897 |||| ||| |||| || ||||| || || ||||| | | ||| |||| ||| | Sbjct 5938075 GACCAATGGGTTGTAGAAGATTAATGTTATTACTTCCGACAAAGTTCTGCGCCAAATTAA 5938016 Query 273898 CGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAAC 273957 | || || || ||||| | || || || ||||| || ||| ||||| | | Sbjct 5938015 CAATCGTAGCCATGAGGGACATTTCTCCATGATGATAAGCCGAGTGCTCGGCAACCGACG 5937956 Query 273958 CACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACA 274017 ||| ||||| || || ||||| |||| | | ||| | |||||| || |||||||| Sbjct 5937955 CACCCAACTGCGCGACTTTCACCTCGCGCTTATCGTTCCTCTTGAAACAGGTATACAACA 5937896 Query 274018 CCTTCCGCTGCGAGGGCTTGAACCCATC 274045 | |||| ||| ||||| || ||||| Sbjct 5937895 CTTTCCTCTGTCCAGGCTTTAAGCCATC 5937868 >seq5 Length=15084686 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 3905693 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3905637 >seq39 Length=1213199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 98546 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 98490 >seq30 Length=2085069 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2070207 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2070151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046706248322878