Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq29867 122 2e-22 seq56519 91.5 3e-13 seq28352 91.5 3e-13 seq163 91.5 3e-13 seq14286 86.0 1e-11 >seq29867 Length=4054 Score = 122 bits (134), Expect = 2e-22 Identities = 317/472 (67%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAAC--CATTTA 281616 ||||||| | |||| || || || |||||||| || |||||||| || ||| |||||| Sbjct 2639 GGATTATGATTGGGGATTTTGGTCGACCAACCAGTACCAATACC--TTCAACTCCATTTA 2696 Query 281617 CCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCAT 281676 ||||| | ||||| | || | ||| || ||| |||||| | ||||||||| | Sbjct 2697 CCAAACACATGGGGATGACTGGAATATACCAAAGTGGCTCAATTCTCAAACCATCATCGT 2756 Query 281677 ACAAATACTTCAGAAGGTTATCATCTGTATCGACGAAA-ACCTGTCGCGTCTTAGGGTTC 281735 ||| || | || | | ||| ||| || || | || | | ||| ||| | | Sbjct 2757 CCAAGTATTCTAGCAAGGGATCGTCTA-ATGGATGGAAGATCAATCGTGTCAACGCAGAC 2815 Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 | ||| ||||| || || | | ||| ||| ||| ||||| || | || | | ||| Sbjct 2816 ATTTTGGTGAAAATGTAACGAGGACTAGCGCTGTCCTTACCGCCATTCAAACGAGTTCCA 2875 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGG 281855 |||||||| | || |||| | | || |||||||| || || || |||| || ||||| Sbjct 2876 AACTGACCTCCAGGAAACAGCAAATTTATGTTATTACTTCCAACATAATTTTGGGCCAGA 2935 Query 281856 TTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA 281915 |||| || || || || || | || || || |||||||| | ||| ||||| Sbjct 2936 TTGATTATAGTACCGCATAGGGACATTTCTCCATGATGATAGGCAGACTTTTCTGCAACC 2995 Query 281916 TAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGCGCAA- 281972 | ||| || ||||| ||||| || || | | ||| || ||||||||| ||| Sbjct 2996 GATCCAGACAATTGTGCAACCTTAACTTCCTTTTTATCA--TTACGTTTGAAA---CAAG 3050 Query 281973 TATA-AT-ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 || | || || || || ||| ||| ||||| ||||| || | | | ||||| Sbjct 3051 TAAACATAACCTTGCGCTGACCAGGTTTGAAGCCATCGACAAGACATGGAAT 3102 >seq56519 Length=2621 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1348 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1407 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1408 CCCCACGTTGGGC 1420 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1634 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1693 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1694 CCCCACGTTGGGC 1706 >seq28352 Length=5921 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2291 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2232 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2231 CCCCACGTTGGGC 2219 >seq163 Length=8804 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 6315 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6374 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 6375 CCCCACGTTGGGC 6387 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 7384 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7443 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7444 CCCCACGTTGGGC 7456 >seq14286 Length=2284 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1716 GCCCGGCTAGCTCAGTCGGTAGAGAATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1775 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1776 CCCACGTTGGGC 1787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056729470498910