Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1270 109 6e-19 >seq1270 Length=21014 Score = 109 bits (120), Expect = 6e-19 Identities = 285/433 (66%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 ||||||||||| || || || || |||| || ||| |||||| |||| || ||||| Sbjct 10738 TTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGATTCCATGAAATTGAATGGATTT 10679 Query 15992 GTA--GCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 || | || |||| | || | |||| ||| | | || ||| || || || |||| Sbjct 10678 TTAGTGTTGTAAATTCGTCCGACT--CCCAATTCTATCAATAGTCTGTCAGCAACGAATT 10621 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | ||||||| |||| | | |||||| || || | | || || | || | || Sbjct 10620 CAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATATCAACTGGTAAGGCATCTG 10561 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAG 16169 |||| |||| ||||| || |||| ||||| || || ||| || || | || | Sbjct 10560 TTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATTTCGATGATTCTTTCTTTTG 10501 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 ||| | ||| || || ||||| || || || |||||||| |||| |||||| | Sbjct 10500 TTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAAGTCGCAGTGTAATCCTTCAT 10441 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 | | || |||||||| || || || | || ||||| || |||||||| | || Sbjct 10440 CACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCATAAGGCCACGTTTCTTAAGCC 10381 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 |||| || | |||||| || ||||| || || || || | ||||| || || | Sbjct 10380 AGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTCGACGGCAGCAAATGCTATAA 10321 Query 16350 ATCGTTCCGCGTA 16362 ||||| |||| Sbjct 10320 TGCGTTCTCCGTA 10308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510898146341240