Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq41364 93.3 3e-14 >seq41364 Length=3858 Score = 93.3 bits (102), Expect = 3e-14 Identities = 183/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||| ||| | || || |||| ||||| || ||| | ||||| || || ||||| ||| Sbjct 2037 GGGTGACTTGGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGGGCAGAATACAAAAC 2096 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTG--CAAACTGTTATAGATACA 18905 |||||| | |||| | |||||| ||||||| || | || || || | | | Sbjct 2097 CTGTCACGATGATTATTCAGGCCAAGGAGTCGATCAATTGTCCGAA--GTCATTAACAGA 2154 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 |||||||| || || | || ||||| ||||| | ||||| || | ||| | Sbjct 2155 ATTAAAACGAAACCCCACGATCGTCGAATTATTATGAGTGCCTGGAACCCGATGGACCTA 2214 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 || ||||| |||| || || ||| || ||||||||||| || ||| |||| Sbjct 2215 CCAAAAATGGCCTTACCACCCTGCCACTGTTTGGCCCAGTTTTACGTGGCCAACAATGAA 2274 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGG 19054 ||||| |||||| | ||||| |||||||| Sbjct 2275 TTATCGTGCCAACTGTACCAAAGATCGGG 2303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399110797801065