Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq71022 529 2e-145 seq1270 206 3e-48 >seq71022 Length=3779 Score = 529 bits (586), Expect = 2e-145 Identities = 1253/1879 (67%), Gaps = 29/1879 (2%) Strand=Plus/Plus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 ||||| || || || | || |||||||||| | || ||||| || || | ||| Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAA 821 Query 52850 TACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTTGTTAGTTTGGA 52908 |||||||| ||||||| ||| ||| | ||| ||| |||| || || |||||||| Sbjct 822 TACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCC 880 Query 52909 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 52968 |||| | || || || | ||| || || | || || ||||||||||| ||||| | Sbjct 881 ATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCG 940 Query 52969 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 53027 |||||||||||||||||| | || | || |||||||| ||||| || || || Sbjct 941 ATCTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 53028 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCC 53084 | ||| || ||||| | | |||| ||||| || || || ||| ||| Sbjct 1001 ACG-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTT 1059 Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 |||| || || ||||| | |||||| | | || |||||| || |||| | ||| ||| Sbjct 1060 TATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGAT 1119 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | || || || ||||| || || | || | ||| |||| | || || || |||| Sbjct 1120 TGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTT 1179 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | || ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | Sbjct 1180 CAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAA 1239 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGAGGTTCCCAATTCC 53321 || |||||| | ||| |||| || ||||| | || | |||||||||| Sbjct 1240 GTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCC 1296 Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 53381 | | ||| | ||| || | ||| || ||||| | Sbjct 1297 ATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGC 1356 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 | ||| |||| || || || | ||||| | || || | |||| ||| || || || | Sbjct 1357 AGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGG 1416 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGTGCTTCCAGGCTATCA 53500 |||| |||||||| || ||||| || || || || || ||| ||||| ||| || Sbjct 1417 CACCATAATAAATCGTCTCGAAAAT-TTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCG 1475 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || ||| | || ||||| || || || | || ||||| ||||| || || || Sbjct 1476 TAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGA 1535 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | ||||||| |||| || || ||||||||| || |||||| | || | ||| || ||| Sbjct 1536 CGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATT 1595 Query 53621 TTATTGAGGTTTCTGACAATTAC---TTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 ||||| | ||| | |||| ||| || || |||| ||| |||||||| Sbjct 1596 TTATTCAAATTTTTCG---TTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 53677 --TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACC 53734 || | ||| | |||||||| ||||| ||||| || |||| |||||| ||||| || Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 53735 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 |||| | | ||||| | ||||| || || | || || || || |||||||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854 | ||||||||| ||| ||| ||||||| || || || || || || | |||||||| Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT-TATAGATTT 53913 ||||||| || ||||| ||||| || ||||| | | | ||||| || | || | Sbjct 1833 GTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATA 1892 Query 53914 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT 53973 | | || || |||| ||| |||| |||||| ||||||||| || ||||| | Sbjct 1893 AAACGACCTT-CTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 53974 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 || | ||||| || |||| || |||||||| |||| | | | | || || | Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 || |||||| | ||| || |||||||| || | ||||| ||| | | || ||| || Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 54094 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 54153 || || ||||| || || | || |||||| | | || || ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 54154 GTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 54213 || |||| | | | ||||| | || || || ||||| || | ||| | ||| || || Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 || || |||| ||||||||| | | ||||| || || || || |||| |||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 |||| |||| |||||| || ||| || || || ||||| |||||| | Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATAC 2311 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAA 54392 || || || | || || ||||| || |||||||| ||||||||||| |||| || || Sbjct 2312 TAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAA 2371 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 |||| || | |||| || ||||| || |||| ||| || ||||| || | Sbjct 2372 TAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACG 2430 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || || || | |||||| | || || |||||||| || || ||||| || ||| Sbjct 2431 CATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCT 2490 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 |||||| ||||| || || | ||| ||||| ||||| || | || || | || Sbjct 2491 CCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCC 2550 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || || |||| ||| || ||| |||||| ||||| || || ||||| ||||| || Sbjct 2551 CCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAA 2610 Query 54633 AGTCTCGTTCGTAAATAAT 54651 | || || |||||||| || Sbjct 2611 AATCACGATCGTAAATGAT 2629 >seq1270 Length=21014 Score = 206 bits (228), Expect = 3e-48 Identities = 374/542 (69%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || ||||| || || |||||||| ||||| || || ||||||| ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTC-AGAAAT 23962 |||||||||| | ||||||| || || || |||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | ||| || || || || || |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 | | | |||||| | ||| | | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 |||||||||| || || || | | ||| | |||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 |||||||| || |||||||| || ||||| ||||| ||| |||||||||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCA-TG--TATCCACTT 24319 || || ||||| || |||| | |||||| ||| |||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||||||||||||||||| ||||| || | ||||| | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 24380 GT 24381 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593122260309360