Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq25532 104 2e-17 seq36344 86.0 5e-12 seq144 86.0 5e-12 >seq25532 Length=5913 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||||||||| || || || || || ||| || | || Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| |||||| ||||||||||| | || ||||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| ||||||||| ||||||| | | || ||| ||||||||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||| | ||| |||| | |||| || || || Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGG 918 >seq36344 Length=11671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| |||| || ||||| || ||||| ||||| ||| ||||| || Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || |||||||| | ||| ||| ||| Sbjct 736 GACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAA 795 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | || ||||| ||||| ||||| ||||| || || |||| ||||| Sbjct 796 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAAC 855 Query 29142 ATTCAGAAGGAATCTAC 29158 || ||||||||||| || Sbjct 856 ATCCAGAAGGAATCAAC 872 >seq144 Length=14776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || ||||||||||| ||| ||| || ||| | Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| ||||| |||||| | || ||||||| Sbjct 14286 GACACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 14345 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || ||||| ||||||||| | |||||| | || || | || |||||| Sbjct 14346 CAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAAT 14405 Query 29142 ATTCAGAAGGAATCTAC 29158 || || ||||| || || Sbjct 14406 ATCCAAAAGGAGTCGAC 14422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427914420598835