Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1270 116 4e-21 seq36344 98.7 1e-15 seq144 89.7 5e-13 >seq1270 Length=21014 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC-GCCGGCAG 117018 ||||| | || || |||||| |||||||||| ||||| | | ||||| || | ||| Sbjct 10239 GAGACCCTTCCATGTGTCAAAAAGAAGGCCGATTGGGCTATTCAATGGATATGCAGTCAG 10298 Query 117019 AGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC 117078 | | ||| | ||| || ||| | | || || || |||||||| || | ||||| Sbjct 10299 A-ACGCCAATTACGGAGAACGCATTATAGCATTTGCTGCCGTCGAAGGAATTTTCTTCAG 10357 Query 117079 GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTT 117138 || ||||| || |||| || ||||| |||||||| ||||| ||||| || ||||| || Sbjct 10358 CGGAAGTTTTGCTTCCATTTTCTGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATT 10417 Query 117139 CAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | ||||| ||||| || | || || || | || |||||||||||||| Sbjct 10418 CTCAAACGAACTCATTTCTCGTGATGAAGGATTACACTGCGACTTTGCCTG 10468 Score = 104 bits (114), Expect = 2e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || |||||||||||||| || ||||| ||||| || || || | || |||| Sbjct 7113 AGGCTGAAGCCTCGTTCTGGACCGTTGAAGAGGTCGACCTTTCTAAAGATATGAAAGACT 7172 Query 116715 GGGAGCGCTTGAACGACAA-CGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| ||||| | ||| || | |||||||| ||||| |||||||||| || Sbjct 7173 GGGAAACATTGAA-GCCAAGTGAAAGGCATTTCATTTCTCACGTTTTGGCCTTTTTTGCA 7231 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || |||||||| || ||||||||| |||| || ||||| ||||| || ||||| Sbjct 7232 GCATCAGACGGCATTGTTAACGAGAATTTGGTTGAACGTTTTAGCCAGGAAGTTCAGGT 7290 >seq36344 Length=11671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || | || || ||||| || || | || |||||| | | Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | ||||||| |||||||| || |||||| | ||||| Sbjct 736 GACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAA 795 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || ||||| || || || |||| || ||| | |||||||||| Sbjct 796 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAAC 855 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||| | || ||||| Sbjct 856 ATCCAGAAGGAATCAACATTGCAT 879 >seq144 Length=14776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||||||||||||| | || ||||| || | Sbjct 13998 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14057 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| ||||||| || || || |||||||| | || || Sbjct 14058 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCAA 14117 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| || || || |||| || | ||||| | |||||||| Sbjct 14118 CAGCGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACAAT 14177 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || ||| | || ||||| Sbjct 14178 ATCCAAAAAGAGTCGACATTGCAT 14201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514699105538320