Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq41364 82.4 5e-11 >seq41364 Length=3858 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 97230 CACATAAAACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGA 97288 ||| |||||||| ||| ||| || ||||| || || ||||||||||| | || | Sbjct 2262 CACGTAAAACTGGGCCAA-ACAGTGGCAGGGTGGTAAGGCCATTTTTGGTAGGTCCATCG 2204 Query 97289 CATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTT-GTGTGTATGGTATTAATT 97347 ||||| |||| ||| | |||| | ||| || |||||| || | || | ||||| Sbjct 2203 GGTTCCAGGCACTCATAATAATTCGACGATC-GTGGGGTTTCGTTTTAATTCTGTTAATG 2145 Query 97348 ATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTA-AGACCTTGATATTC 97406 | | |||||||| || |||| || ||||| | | | || ||| ||||| Sbjct 2144 ACTTCGGACAATTGATCGACTCCTTGGCCTGAATAATCATCGTGACAGGTTTTG-TATTC 2086 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 ||| || ||||| | |||||| || |||||||| ||||| | ||| || || |||||||| Sbjct 2085 TGCCCCGAAATGACGCCATTGAAAGCCATAAACTGGTCCCAAGTCACCCTCCTCTCTATC 2026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346442686192490