Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq46230 116 7e-21 seq7849 100 5e-16 >seq46230 Length=8760 Score = 116 bits (128), Expect = 7e-21 Identities = 201/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 135568 GACCAAAAAACTATAGGTATTCCTATTTATACAGATAAAGACGAGTGGACTACGTGGaaa 135627 ||| ||| | | | ||| ||| || | || |||| ||| || ||| | |||||| Sbjct 508 GACGAAATACCAAAAGGAATTGAAATATTTAGTGATACAGATGAATGGGCATTGTGGAAT 567 Query 135628 aaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATA 135687 |||| | ||||| ||| | ||||| ||| | | | |||||| ||| | | |||| Sbjct 568 AAAAGAGGAGATCCAGTTCTTCATATTGAATTGGGAAAATGGGCTGATTTAATGGTTATT 627 Query 135688 GCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTG 135747 || || || ||||||||||| ||||||| || ||||| | |||||||||||||| Sbjct 628 GCACCATTGGATGCAAATACGTTGTCAAAAATGGCCAATGGGCTCTGCGATAATTTACTT 687 Query 135748 ACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAAT 135807 ||||| |||| |||||| || |||||| | | || || || ||||||||| Sbjct 688 TTGTCTACAACGCGAGCTTGGGATTTGAAGAAACCATTACTATTTTGCCCAGCAATGAAT 747 Query 135808 ACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAAT 135859 || |||||||||||||| || || || ||| ||| | ||||||| Sbjct 748 ACAAGAATGTGGGAACATCCCATAACCCAACCACAAATAAACCTTTTAAAAT 799 >seq7849 Length=1912 Score = 100 bits (110), Expect = 5e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 || ||||| | ||||||| | |||| || ||| | || |||||||||||||||| Sbjct 1598 ACCCATGACGATTTATGGAATTCAGCACAGATACAGCTAGTTCGAGAAGGAAAAATGCAC 1657 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGAC 189556 | |||||||| ||||| ||||| ||||||||| | || ||||| |||||| ||| | Sbjct 1658 GGCTTTTTACGTATGTACTGGGCCAAGAAGATATTAGAGTGGACAGAAACACCAGAACAA 1717 Query 189557 GC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAA 189615 || | ||| || || ||| | || | ||| || || || | || ||||| Sbjct 1718 GCACTAGAG-TACGCAATATATATAAATGATCGTTACAGTCTTGATGGAAGAGACCCTAA 1776 Query 189616 CGGATACGTAGGTTGTATGTGGTCTAT 189642 |||||| || ||||| ||||||||||| Sbjct 1777 CGGATATGTCGGTTGCATGTGGTCTAT 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922264867450280