Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20332 105 8e-18 seq21274 102 9e-17 seq65663 95.1 1e-14 seq48608 93.3 5e-14 seq41431 93.3 5e-14 seq36068 93.3 5e-14 seq23277 93.3 5e-14 seq28917 91.5 2e-13 seq61142 89.7 6e-13 seq24234 89.7 6e-13 seq18999 89.7 6e-13 seq4145 89.7 6e-13 >seq20332 Length=1572 Score = 105 bits (116), Expect = 8e-18 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 60041 CAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCG 60100 || ||||| ||||| ||||| | ||||| || | |||||| |||||| ||||||||||| Sbjct 1170 CACATTAA--TTTATTAAAAAATATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCG 1113 Query 60101 TGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||| ||||| |||||||||||| |||||| Sbjct 1112 TGACAGGCGGGGATACTGACCACTATACTATCGAGGA 1076 >seq21274 Length=2047 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||||||||| | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 1109 AAAAATCTTCTCCTCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1168 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| || ||| Sbjct 1169 TAACCACTATACTATCGGGGA 1189 >seq65663 Length=6885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 409 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 468 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 469 TACTATCGAGGA 480 >seq48608 Length=6774 Score = 93.3 bits (102), Expect = 5e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 3832 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAG 3773 Query 60136 GATT 60139 |||| Sbjct 3772 GATT 3769 >seq41431 Length=3534 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 254 AAAAAGTACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 313 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 314 TTACCACTATACTATCGAGGA 334 >seq36068 Length=2326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | |||||| |||||| |||||||| |||||||||||| |||| Sbjct 2126 AAAAAGATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCACGTGACAGGCGGGGATAC 2185 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATATAACTTGAATATTA 60160 | |||||||||||| |||||| ||| || | ||| |||| |||| Sbjct 2186 TGACCACTATACTATCGAGGACTTGTAT-TTTAATGTGAAGATTA 2229 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||||||| |||||||||||| ||||| ||||||| Sbjct 871 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCACGTGACAGGCGGGGATACTGACCACTA 930 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 931 TACTATCGAGGATT 944 >seq23277 Length=1262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | || ||| |||||| ||||||||||||||||||||| |||| Sbjct 286 AAAAAAATCCTCCCCGACGGGCAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 227 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 226 TCACCACTATACTATCGAGGA 206 >seq28917 Length=2944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/107 (80%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107 ||||| ||||| || |||| || | |||||| |||||| |||||||||||||||||| Sbjct 1282 TTTATTAAAAAAATTAACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGG 1223 Query 60108 CGGACATACTCACCACTATACTACCGAGGA-TTGAATATATAACTTG 60153 ||| ||||| ||||||||| || |||||| ||| ||| | ||||| Sbjct 1222 CGGGGATACTGACCACTATAGTATCGAGGACTTG--TATGTTACTTG 1178 >seq61142 Length=4265 Score = 89.7 bits (98), Expect = 6e-13 Identities = 89/112 (79%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| | | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 2652 AAAAAAATTCTCCCAGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2593 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATATAACTTG--AATAT--TACAA 60163 | |||||||||||| | |||| || || || ||||| ||||| ||||| Sbjct 2592 TGACCACTATACTATCTAGGACATGTATTTAAGACTTGTTAATATGCTACAA 2541 >seq24234 Length=2149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 704 CTCCTCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 763 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 764 TACTATCGGGGA 775 >seq18999 Length=1928 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1005 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 946 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 945 TACTATCGAGGA 934 >seq4145 Length=2785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2168 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2109 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2108 TACTATCGAGGA 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571240371575960