Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq31860 127 3e-24 seq144 120 5e-22 seq3660 96.9 5e-15 seq36344 89.7 8e-13 seq25532 87.8 3e-12 seq10280 84.2 3e-11 >seq31860 Length=14314 Score = 127 bits (140), Expect = 3e-24 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 146062 TCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 ||||| |||||||| || || || ||||| || || || || ||| ||| ||| Sbjct 1277 TCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCC 1218 Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || |||||||| |||||||||||||||||||||||||| || || || |||||||| Sbjct 1217 ATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTT 1158 Query 146182 ATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGAT 146241 ||| || || |||||| | || |||| ||||| || Sbjct 1157 ATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTAT 1098 Query 146242 TGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| || |||| |||||||||||||||||||| Sbjct 1097 TGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq144 Length=14776 Score = 120 bits (132), Expect = 5e-22 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| |||||||| ||||| || || || || || | ||| | | ||| || Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||||||||| |||||||| | |||||||| |||||||| |||||||| ||||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| ||| ||| ||||| | |||||| ||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| ||||| | ||| |||||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || || ||||| || ||||||||||| || || | | ||| || Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| ||||| | ||||||||| || || || ||||| |||||||| Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTG 13064 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||| || || || || || ||||| || ||||| | || | || ||| || Sbjct 14435 TACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTC 14376 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||| || ||||||||||| | || ||||| ||||| || ||||| |||||||| Sbjct 14375 TAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTG 14316 >seq3660 Length=14069 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/210 (69%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| || || ||||| ||| || || || || || | ||||||| ||| || Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGA-ATGTTGTAGTCGCCCAATGTTCTGCCATCTTC 2441 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| | ||| ||||| || || |||||||| || ||||| Sbjct 2440 CAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTG 2381 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 |||||| ||| ||| ||||| | ||||||||| || Sbjct 2380 AATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTT 2321 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || | ||| |||||||| Sbjct 2320 TCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq36344 Length=11671 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || | ||||||||||| ||||| || || || Sbjct 674 CCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGAC 615 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| |||||||||||||| || |||||||| | || ||||| || ||| Sbjct 614 AAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 555 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 554 ATACCTTCCTTATCCTG 538 >seq25532 Length=5913 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||| | | ||| | ||||| || || ||||| ||||| ||||| ||||| Sbjct 917 TCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACC 976 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || || || |||||||| |||||||||||||||||||| ||||| || || Sbjct 977 CAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1036 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 1037 GATGCCTTCTTTATCCTG 1054 >seq10280 Length=2131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/263 (68%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 209090 CACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAA 209149 || || || || || ||||||| ||||| | ||||| ||| || ||||||| | Sbjct 1624 CATGGGTTCCACGTCCATGAATTCGGTGACAATACAAATGGGTGTGTTTCTGCAGGAGCA 1565 Query 209150 CATTTTAATCCATATAATAGACAACATGGAGATATTAG-TGATAAAATACATCGTCATGT 209208 |||||||| ||| || | | |||||||| | || |||| |||| | | |||| Sbjct 1564 CATTTTAACCCACATGGAAAAGTACATGGAGG-ACCAGATGATGAAAT---TAGACATGC 1509 Query 209209 TGGTGATTTTGGTAATGT-GTATGCAGACGAAAATGGCGTTGCTAATATTGATTTTCACG 209267 || ||| | || ||||| ||| || || ||||||||||||| || ||||| | | Sbjct 1508 AGGAGATATGGGAAATGTCGTA-GCCGATAAAAATGGCGTTGCAAAAGTTGATATCAGTG 1450 Query 209268 ATGATATTATATCATTGTGTGGAACAAATAATATAATAGGAAGAACATTAGTAGTTCATG 209327 || | ||| ||||||| ||| ||| | ||| ||||| | || | || ||||||| Sbjct 1449 ATAAGCATATGTCATTGTCGGGACCAATGAGTATTGTAGGACGTACTCTTGTCGTTCATG 1390 Query 209328 ATTCGCCTGATGATTTAGGAAAA 209350 | || |||||||| ||| || Sbjct 1389 CTGATCCAGATGATTTGGGACAA 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742775837981440