Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq144 91.5 1e-13 >seq144 Length=14776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| || |||||| || || |||||||| || || | || || Sbjct 13979 TACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTC 13920 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 | ||||||||| ||||| ||||| |||||||| || || || | ||| ||||| ||| Sbjct 13919 TAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTG 13860 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | | | | ||| ||| || |||| ||| || || || Sbjct 13859 GATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTT 13800 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| || ||||||||||| Sbjct 13799 GCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| || ||| || || || |||||||| || | ||| | || || Sbjct 14207 TACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCTTC 14148 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||| ||||| ||||| ||||| |||||||| || ||||| | || ||||| || Sbjct 14147 CAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTTG 14088 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||| || | | | | ||| ||| || |||| ||| || || || Sbjct 14087 AATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTT 14028 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || | || ||||| |||||||||||| Sbjct 14027 GCCAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| || |||||| || || |||||||| || | || | || || Sbjct 14435 TACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTC 14376 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 | |||||| ||||| || ||||| |||||||| || ||||| | ||| ||||| || Sbjct 14375 TAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTG 14316 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||||| | | ||||| ||| || |||| ||| || || || Sbjct 14315 AATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTT 14256 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || | || ||||| |||||||||||| Sbjct 14255 GCCAGTTAAGGTTTTCACGAAGATTTGCATG 14225 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||| ||||||||||| || || ||| || | || ||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||||||| || || ||||| || || || || || || | ||| ||||| || | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| | | | |||| | ||| ||||||| ||||| ||||| Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || || ||||||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394686356740897