Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1270 129 6e-25 >seq1270 Length=21014 Score = 129 bits (142), Expect = 6e-25 Identities = 398/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Minus Query 13851 AAAACT-AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCC 13909 |||||| |||||||| | || || | |||||||| || || | | ||||| Sbjct 10822 AAAACTTAAAAATCAGCGTCCAAAGTGAAAACATTGTCCAAACGTTTGGCCGTCACGCCA 10763 Query 13910 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13969 | || |||||||| | ||| | ||||| ||||| || || || ||||| ||||| ||| Sbjct 10762 AACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATA 10703 Query 13970 TTTTCCATAAAATCAAATGGATTTGT--TGACATAAACACTTTATCACAA-CCTAGTTCT 14026 |||||| |||| ||||||||| | || |||| || || | || | |||| Sbjct 10702 GATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAA---TTCGTCCGACTCCCAATTCT 10646 Query 14027 AATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCT 14086 | | || ||| || |||| ||| |||||||||| ||||| | | |||||||| || Sbjct 10645 ATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCA 10586 Query 14087 ATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 14146 | | | || || | || ||||| ||||| | ||| || ||||| || Sbjct 10585 AGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGG 10526 Query 14147 ATAATAATCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACA 14205 ||||| ||| | || |||| || | || | || | || || | || Sbjct 10525 ATAATT-TCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCA 10467 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||| || || || | || ||||| | | ||| ||||||||||| ||||| | || Sbjct 10466 GGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACC 10407 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 ||||| | || ||||| || | ||| || || | ||| || |||| ||||| || Sbjct 10406 AGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAAT 10347 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14385 ||| || || |||||||| ||||| | |||||||| | || || | | |||| Sbjct 10346 TCCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATAT 10287 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 ||||| ||||||| || | || ||||| | | | | || |||| ||||| || Sbjct 10286 CCATTGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAA 10227 Query 14446 TAAATGTTC 14454 || ||| || Sbjct 10226 TAGATGGTC 10218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481858690204760