Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25532 120 2e-22 seq31860 114 1e-20 seq3660 107 1e-18 seq144 107 1e-18 >seq25532 Length=5913 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18095 TTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 || ||| || || | ||| || |||| ||| | ||| || ||||| || || ||||| || Sbjct 914 TTGTCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATC 973 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 ||| ||| || ||||||||||||||||| ||| | || | |||||||||||| Sbjct 974 ACCCAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGG 1033 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | |||||| ||||| ||||| |||||| | ||| ||||| | | ||| Sbjct 1034 TGGGATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTC 1093 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || | || || ||||||||||| || ||||||||||| Sbjct 1094 AACTTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq31860 Length=14314 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || | ||| || |||| || | ||| || ||||||||||||||||||||| Sbjct 1289 TCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCT 1230 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||||| | |||||||||||||||||| ||| | || | |||||| ||||| || Sbjct 1229 AAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGG 1170 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| ||| | ||||| | | ||| || || | ||| | Sbjct 1169 GATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGC 1110 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || |||| ||||| | ||||| | || |||||||| Sbjct 1109 TTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq3660 Length=14069 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| || | ||| ||||| |||||||||||||||||| || Sbjct 2517 CCTCCACGGAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCC 2458 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||||||||||||||| ||| | || | | ||||||||| || Sbjct 2457 AATGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGG 2398 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | |||||| | | ||| ||| || | || | Sbjct 2397 ATTCCTTCCTTCTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACT 2338 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || ||||| || || || || |||||||| Sbjct 2337 TCCAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq144 Length=14776 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | ||| || |||||||| || |||||||| | || ||| | |||| Sbjct 14209 AGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCT 14150 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || | | |||||||| || | |||||||||||| Sbjct 14149 TCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCT 14090 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | | ||| || || ||||||| ||| | ||||||| || Sbjct 14089 TGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTT 14030 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || ||||| || || |||||||| Sbjct 14029 TTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | ||| || || ||||| || |||||||| | || ||| | |||| Sbjct 14437 AGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCT 14378 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || ||||||||||| ||| | || | | |||||||| || | ||||||||||| Sbjct 14377 TCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCT 14318 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | | ||||| ||||||| ||| | ||||||| | Sbjct 14317 TGAATTT-TAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGT 14259 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || || ||||| || || |||||||| Sbjct 14258 TTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || ||||||||||||||||| | || || | |||| Sbjct 13753 AGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCT 13694 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || || | ||||||||| || | ||||| || || Sbjct 13693 TCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 13634 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | ||| ||| || ||||||| ||| | |||||| || Sbjct 13633 TGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTT 13574 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||||||||| |||||||| ||||| Sbjct 13573 TTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378970639795965