Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1270 178 3e-39 seq41364 132 1e-25 >seq1270 Length=21014 Score = 178 bits (196), Expect = 3e-39 Identities = 343/505 (68%), Gaps = 6/505 (1%) Strand=Plus/Plus Query 101853 TCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACG---ATTTGGCGG 101909 |||| ||||||| | ||||||||| | ||||| || | |||| ||| | | Sbjct 10255 TCAAAAAGAAGGCCGATTGGGCTATTCAATGGATATGCAGTCAGAACGCCAATTACGGAG 10314 Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 ||| ||| | || |||||||| || |||||||| ||||| || || || || |||| Sbjct 10315 AACGCATTATAGCATTTGCTGCCGTCGAAGGAATTTTCTTCAGCGGAAGTTTTGCTTCCA 10374 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 |||||||| | ||||| | || || |||||||||| || | ||| || || |||||| Sbjct 10375 TTTTCTGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATTCTCAAACGAACTCATTT 10434 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089 || | || ||||| | || |||||||||| ||| | |||| | || || Sbjct 10435 CTCGTGATGAAGGATTACACTGCGACTTTGCCTGCCTTATGTTCCGTTA---CTTAGTCC 10491 Query 102090 ATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 | | ||| ||| |||||| || | |||||| || |||||| || ||||||||| | Sbjct 10492 AGAAACCAACAAAAGAAAGAATCATCGAAATTATCCGTGAAGCTGTTGAAATTGAACAGG 10551 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||| | |||| | || | || ||| | | | || ||||| ||||| | ||| Sbjct 10552 AATTCTTAACAGATGCCTTACCAGTTGATATGCTTGGCATGAATTGCAAACTTATGTCAG 10611 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATA 102269 | || |||||||| || || || | ||||||| | ||| ||||| | | | || | Sbjct 10612 AATATATTGAATTCGTTGCTGACAGACTATTGATAGAATTGGGAGTCGGACGAATTTACA 10671 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | || || || ||| |||||||| |||||| || || ||||| || || | Sbjct 10672 ACACTAAAAATCCATTCAATTTCATGGAATCTATTTCACTAGAAGGCAAGACGAATTTCT 10731 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCA 102354 | ||||||| ||||| ||| ||||| Sbjct 10732 TCGAAAAGAAAGTCGGCGAATATCA 10756 >seq41364 Length=3858 Score = 132 bits (146), Expect = 1e-25 Identities = 328/495 (66%), Gaps = 2/495 (0%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || ||| ||| ||| | |||||||| || | || ||||||||| | | || || || Sbjct 1801 ACAGGAGTAGGCACTTTGTCCATTTTCGGGGCACAGATGAGGTTCAGTTTGAGAAACAAC 1860 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 ||| | || || | ||||| || | |||| ||| ||||||| | || ||||| Sbjct 1861 ACTGTCCCCATTTTGACTACAAAAAGGGTTTTTTGGCGAGGAGTGGCTGAGGAACTACTT 1920 Query 35279 TGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGG 35338 ||||| || | ||| | |||| | | ||| || || |||| || | | ||| ||| Sbjct 1921 TGGTTTATTAAGGGTAGTACAAATGTCAAGGATTTACAGGAGAAAAATGTTCGCATTTGG 1980 Query 35339 AACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGA 35398 | | || | | || |||| ||| ||| | ||| || |||||||| ||||| Sbjct 1981 GATGGCAACAGTACCCGTGAATATTTAGACTCTTTAGGATTGACCGATAGAGAGGAGGGT 2040 Query 35399 GATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGT 35458 || |||||||| || || || || |||||||||||||| || || ||||| | |||||| Sbjct 2041 GACTTGGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGGGCAGAATACAAAACCTGT 2100 Query 35459 TCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGA 35518 |||||| | || | || | ||||||||| || | | | || | | | | Sbjct 2101 CACGATGATTATTCAGGCCAAGGAGTCGATCAATTGTCCGAAGTCATTAACAGAATTAAA 2160 Query 35519 GAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTT 35578 || || | ||| | | || ||||||| || ||||| || ||||| || | Sbjct 2161 ACGAAACCCCACGATCGTCGAATTATTATGAGTGCCTGGAACCCGATGGACCTACCAAAA 2220 Query 35579 ATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTC 35637 ||||| | || || |||||| || | || || ||||| ||||| || ||||| || Sbjct 2221 ATGGCCTTACCACCCTGCCAC-TGTTTGGCCCAGTTTTACGTGGCCAACAATGAATTATC 2279 Query 35638 GTGCCAGTTGTATCA 35652 |||||| |||| || Sbjct 2280 GTGCCAACTGTACCA 2294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988560078362935