Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq71022 556 2e-153 seq1270 197 2e-45 >seq71022 Length=3779 Score = 556 bits (616), Expect = 2e-153 Identities = 1265/1888 (67%), Gaps = 29/1888 (2%) Strand=Plus/Plus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 ||||| || || || | || |||||||||| | || ||||| || || | ||| Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAA 821 Query 62088 TACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGA 62146 |||||||| ||||||| ||| ||| | ||| ||| |||| || || |||||||| Sbjct 822 TACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCC 880 Query 62147 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62206 |||| | || || || | ||| || || | || || ||||||||||| ||||| | Sbjct 881 ATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCG 940 Query 62207 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTC 62265 |||||||||||||||||| | || | || |||||||| ||||| || || || Sbjct 941 ATCTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 62266 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCC 62322 | ||| || ||||| | | |||| |||||||| || || ||| ||| Sbjct 1001 ACG-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTT 1059 Query 62323 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGT 62382 |||| || || ||||| | |||||| | | || |||||| || |||| | ||| | | Sbjct 1060 TATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGAT 1119 Query 62383 TAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62442 | || || |||||||| || || | || | ||| |||| | || || || |||| Sbjct 1120 TGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTT 1179 Query 62443 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 | | || ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | Sbjct 1180 CAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAA 1239 Query 62503 ATAAACTATTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGATGTTCCCAATTCC 62559 || |||||| | ||| |||| || ||||| | || | | |||||||||| Sbjct 1240 GTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCC 1296 Query 62560 AAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACG 62619 | | ||| | ||| ||| || | ||| || ||||| | Sbjct 1297 ATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGC 1356 Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 | ||| |||| || ||||| | ||||| | || || | || | ||| || || || | Sbjct 1357 AGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGG 1416 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC-TTGTGCTTCCGGGCTATCA 62738 |||| |||||||| || || || || || || || || ||| ||||| ||| || Sbjct 1417 CACCATAATAAATCGTCTCGAAAAT-TTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCG 1475 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 | || ||| | || ||||| || || || | || ||||| ||||| || || || Sbjct 1476 TAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGA 1535 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 | ||||||| |||| || || ||||||||| || |||||| | || | ||| || ||| Sbjct 1536 CGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATT 1595 Query 62859 TTATTGAGATTTCTGACAATTAC---TTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62914 ||||| | |||| | |||| ||| || || |||| ||| |||||||| Sbjct 1596 TTATTCAAATTTTTCG---TTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 62915 --TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 | ||| | |||||||| ||||| |||| || |||| |||||| ||||| || Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 |||| | | ||||| | ||||| || || | || || || || || ||||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | ||||||||| ||| ||| ||||||| || || || || || || | || ||||| Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTT 63151 ||||||| |||||||| ||||| || ||||| | | | ||||| || | || | Sbjct 1833 GTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATA 1892 Query 63152 GTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211 | |||| || |||| ||| | || |||||| ||| ||||| || ||||| | Sbjct 1893 AAACGACCTT-CTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 63212 GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 || | | ||| || |||| || |||||||| |||| | | | | || || | Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 || |||||| | ||| || |||||||| || | ||||| ||| | | || ||| || Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || || ||||| || || | || |||||| | | || || ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 || ||||| | | | ||||| | || || || ||||| || | ||| | ||| || || Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 || || |||| ||||||||| | | || ||||| || || || ||||||| |||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 ||| |||| |||||| || ||| || ||||| ||||| |||||| | Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATAC 2311 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAA 63630 || || || | || || || || || ||||| || || |||||||| |||| || || Sbjct 2312 TAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAA 2371 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 |||| || | |||| || |||||| || |||| ||| || ||||| || | Sbjct 2372 TAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACG 2430 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 | || || || | |||||| | || || ||||||||||| || ||||| || ||| Sbjct 2431 CATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCT 2490 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 |||||| ||||| || || | ||| ||||| ||||| || | || |||| ||| Sbjct 2491 CCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCC 2550 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 || || |||||||| || ||| |||||| ||||| || || ||||| ||||| || Sbjct 2551 CCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAA 2610 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATT 63898 | || || |||||||| || ||||||| Sbjct 2611 AATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 197 bits (218), Expect = 2e-45 Identities = 372/542 (69%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || ||||| || || |||||||| ||||| || || ||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTC-AGAAAT 33409 |||||||||| || ||||| || ||||||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 | ||| || || |||||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | |||||| | || | || | ||||| |||||||| || || | ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | | |||||| | ||| || | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 |||||||| | || || || | | ||| | |||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 |||||||| || |||||||| || |||||||| || |||| ||||| |||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TG--TATCCACTT 33766 || |||||||| || |||| | ||||| ||| |||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||||||||||||||||| ||||| || | || || | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 33827 GT 33828 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629181822750960