Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq71022 482 2e-131 seq1270 154 1e-32 >seq71022 Length=3779 Score = 482 bits (534), Expect = 2e-131 Identities = 1227/1841 (67%), Gaps = 52/1841 (3%) Strand=Plus/Plus Query 36822 TTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCAT 36881 |||||||| || |||||||||||||||||||| || || |||| ||| |||| || || Sbjct 806 TTTTGTTCGCAAATAATACATTCCAGTTTTTAAACCAGATTTCCAGCCGAAAAAGTGAAT 865 Query 36882 ACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATC 36941 ||| |||||| | || | || | | | || || | | ||| || ||||| Sbjct 866 TGAGGTTAGTTTTCCATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATC 925 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGA--GATATCTCCCAA 36999 || || || |||| || || ||||||| || || ||| || || | |||||| Sbjct 926 GATGAATGCTCCTCGATCTGCAGCCATTTTTATGGC-CACTTT-GACCGAAACTTCCCAA 983 Query 37000 ACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGAACCA 37056 || ||||| || | || || | | ||| | ||| | || |||||| ||||| Sbjct 984 ACGGTTTTGTACAATTCACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCG 1043 Query 37057 TTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCT 37116 |||| || |||| |||| || || |||| | ||| | || | ||| ||| Sbjct 1044 TTATTGGCCAAAATTTTATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCT 1103 Query 37117 CTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTC--TTGTATATA 37174 | | | || |||| |||||||| || || || |||| || | || ||||| | Sbjct 1104 TTAAGCAAATGATGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACG 1163 Query 37175 TATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAG 37234 | ||| | || || ||||||| || ||||| || | | ||||| | || || || | Sbjct 1164 T-TTGAT-GTGTAAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGG 1221 Query 37235 TAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATT---AATTCTCTTTT 37291 | ||||||||||| | || ||| |||||| | || ||| || |||| ||| | Sbjct 1222 TTGGCATTGGTGCCAAAAGTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCT 1278 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAA 37351 | | ||||| ||||| ||||||||||||||| || || |||||| ||||| || | || Sbjct 1279 TCAATTCATCCCAATTCCATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAA 1338 Query 37352 TACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTT 37411 | |||||||| |||| | | | ||| |||||||| | || | ||||| || | || Sbjct 1339 TGCCTTTACTAACTGGGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATT 1398 Query 37412 CGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 | ||||| ||| | || ||||||| || || |||||||||||| || |||| || Sbjct 1399 CAGTACTAGCTTCCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATT 1458 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 ||||||||||| ||| | | || | || || ||||| ||||||||| ||||||| Sbjct 1459 GGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAA 1518 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAAT 37591 | || || || ||||| | |||| || |||| ||| | | |||| | |||||| Sbjct 1519 CGCCAATTCCAATGGGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAA 1578 Query 37592 AATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACT 37651 | |||| ||| || |||||||| | |||||| || |||| || | | | |||| | Sbjct 1579 AGTTGACATCAATGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATT 1638 Query 37652 TGTCGAACATAAATACGTT-----ATTATTAACAAATTTACTCAACGAAATAGATCCTAG 37706 | | ||| || || ||||| |||| ||||||| || |||| | ||| || | | Sbjct 1639 TCTTGAA-ATCAA-ACGTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAA 1696 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACT---AAATTGTATAATCTCTGTACAGAGATT 37763 |||||| || |||||||||||| ||||| | ||| | |||||||||||| | || Sbjct 1697 ATTACAGACGGCAACTTCATCT---TTACTTGAATATTCGACAATCTCTGTACACAAGTT 1753 Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823 || || |||| ||||| | ||| ||| || |||||| | ||||||| ||||| || Sbjct 1754 GCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTA 1813 Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883 || ||||| ||||| || ||| | ||||| || ||||| | ||| | | || Sbjct 1814 GAGCATATAAGGCGTACCCGTTTCAACTTGAGATTCAATAATGGCAAACCA-GAGGTCCT 1872 Query 37884 -TGCTTTAA-CGATCG-CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTT 37940 ||| |||| | || | || ||||| |||| |||| | | || ||||| | Sbjct 1873 GTGCCTTAATCTGGCGAATAAAACGACCTTCTT--TTTCATATTGTGTGTACAATTTTTC 1930 Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| || | |||||| ||| || || || || || || ||||| | | ||| Sbjct 1931 AAACTCCTCACCCCATGTGTCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCA 1990 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 ||||| || || | || |||||| ||||| || | ||| | || |||||| Sbjct 1991 CATTTCATTAGACTCGACCCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAA 2050 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATA 38119 ||| | || |||||| || || ||| |||||| ||| ||| || ||||| | Sbjct 2051 ATCACGAGCCCTTCCTTCTTCCTTGCCCGTATT-TTTCTTCAAGTCTAGGAACTCGAAAA 2109 Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCT 38179 || ||||||| ||||| | |||||| | | || || ||||| |||| ||| |||| Sbjct 2110 CGTCCCCGTGCCAAGGTTCAAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCT 2169 Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239 | | | || | | | || || || || | || ||||| ||||||| ||||| || Sbjct 2170 GGTCCACGTAACGAGCCGTATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAA 2229 Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT---- 38295 ||||||| |||||| |||||||| ||||| || || ||| | | | ||| | Sbjct 2230 TGCCGTTAGTACCGGCGATATAAGTTCCCTTGGCCCGAATA-CAGTGA---ACATTTAGG 2285 Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || ||||| |||||| ||| |||| || || || || || || ||||| | || || Sbjct 2286 CCAATTCCGCCTGCAGATTTAGATACTAGCGCACACTGCTTCAAGGTATCGTAAATGCCC 2345 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || ||||| ||||| | || | | || || ||| |||| ||||| || || Sbjct 2346 TCAATACTATCATCACTCATCGTCAATAAGAAGCAAGATGACAACTGAGGACGAGGGGTG 2405 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475 | || ||| |||||||| || ||||| |||| | ||| ||||| ||||| Sbjct 2406 GCCGCTGCAAACAATGTAGGCGACGCATGAGTGAAATAACGTTCAGACAACAGGTTATAC 2465 Query 38476 GTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATA 38535 || || || || || || || | || ||||| |||| || ||| ||||| | |||| Sbjct 2466 GTCTCAATGGCAGAGTCAATGTCCTCCCCATGAATGCCTACAGCTACTCTCATCAACATA 2525 Query 38536 TGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 || ||||| | || | | ||| ||| || || | | ||| ||| ||| || Sbjct 2526 TGCTGTGGACGCTCCACAACTTTCCCCTTAATC---TTCAACAAATAAGATCGTTCCAAG 2582 Query 38593 GTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||| | || |||||| | || | |||| | |||||| Sbjct 2583 GTTTTGAAGCCGAAATAATTGTAGCCAAAATCACGATCGTA 2623 >seq1270 Length=21014 Score = 154 bits (170), Expect = 1e-32 Identities = 349/522 (67%), Gaps = 7/522 (1%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| || | ||| |||||||| | ||| |||||| ||||| ||||| |||||||| Sbjct 10769 CACGCCAAACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAG 10710 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| ||| | ||||| || | || ||||| | ||| | | | | | || || Sbjct 10709 TGAAATAGATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAA 10650 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| | |||| ||| || || |||||||| ||||| | ||||| | |||||||| Sbjct 10649 TTCTATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCAT 10590 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || | | ||| || || | ||| |||| || || |||| ||| || | ||| || || Sbjct 10589 GCCAAGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTC 10530 Query 11569 AATGAT--TATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | ||| | |||| | || ||| || | |||| || | ||| | ||||| Sbjct 10529 ACGGATAATTTCGA--TGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATA 10472 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| || || ||||| ||||| || | | || ||||| || || ||||| Sbjct 10471 AGGCAGGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTC 10412 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||| | || ||||| || | ||| || || | |||||| || ||| Sbjct 10411 AGACCAGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAG 10352 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC---ATATACCTTGTTGCTA 11803 || ||||| || || || |||||||||| | | |||||| || | || | || Sbjct 10351 AAAATTCCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTG 10292 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCAT 11845 ||||||||| | |||||||| || |||||||| || ||| Sbjct 10291 CATATCCATTGAATAGCCCAATCGGCCTTCTTTTTGACACAT 10250 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||||||||||||||| || |||| ||||| |||||||||||||| | ||| ||||| || Sbjct 7473 ATCTCTTACATATGTGTCGATTAGCAAACTGTACATTTCTGAATGCACATTCTCCATTGC 7414 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||| |||||||||||||||| ||| || Sbjct 7413 AATTTGGAATCCATAGAAACATCTTGCTTC 7384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468051841784080