Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq71022 554 6e-153 seq1270 212 8e-50 >seq71022 Length=3779 Score = 554 bits (614), Expect = 6e-153 Identities = 1264/1888 (67%), Gaps = 29/1888 (2%) Strand=Plus/Plus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 ||||| || || || | || |||||||||| | || ||||| || || | ||| Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAA 821 Query 64881 TACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGA 64939 |||||||| ||||||| ||| ||| | ||| ||| |||| || || |||||||| Sbjct 822 TACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCC 880 Query 64940 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 64999 |||| | || || || | ||| || || | || || ||||||||||| ||||| | Sbjct 881 ATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCG 940 Query 65000 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 65058 |||||||||||||||||| | || | || |||||||| ||||| || || || Sbjct 941 ATCTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 65059 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 65115 | ||| || ||||| | | |||| |||||||| || || |||| ||| Sbjct 1001 ACG-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTT 1059 Query 65116 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 65175 |||| || || ||||| | |||||| | | || |||||| || |||| | ||| ||| Sbjct 1060 TATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGAT 1119 Query 65176 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 65235 | || || || ||||| || || | || | ||| |||| | || || || |||| Sbjct 1120 TGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTT 1179 Query 65236 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | | || ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | Sbjct 1180 CAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAA 1239 Query 65296 ATAAACTATTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGAGGTTCCCAATTCC 65352 || |||||| | ||| |||| || ||||| | || | |||||||||| Sbjct 1240 GTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCC 1296 Query 65353 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 65412 | | ||| | ||| || | ||| || ||||| | Sbjct 1297 ATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGC 1356 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 | ||| |||| || || || | ||||| | || || | |||| ||| || || || | Sbjct 1357 AGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGG 1416 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGTGCTTCCAGGCTATCA 65531 |||| |||||||| || ||||| || || || || || ||| ||||| ||| || Sbjct 1417 CACCATAATAAATCGTCTCGAAAAT-TTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCG 1475 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 | || ||| | || ||||| || || || | || ||||| ||||| || || || Sbjct 1476 TAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGA 1535 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 | ||||||| |||| || || ||||||||| || |||||| | || | ||| || ||| Sbjct 1536 CGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATT 1595 Query 65652 TTATTGAGATTTCTGACAATTAC---TTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 65707 ||||| | |||| | |||| ||| || || |||| ||| |||||||| Sbjct 1596 TTATTCAAATTTTTCG---TTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 65708 --TCGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACC 65765 | |||| | |||||||| ||||| |||| || |||| |||||| ||||| || Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 65766 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 |||| | | ||||| | ||||| || || | || || || || |||||||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||||||||| ||| ||| ||||||| || || || || || || | || ||||| Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTT 65944 ||||||| |||||||| ||||| || ||||| | | | ||||| || | || | Sbjct 1833 GTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATA 1892 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 | | || || |||| ||| |||| |||||| ||| ||||| || ||||| | Sbjct 1893 AAACGACCTT-CTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 66064 || | ||||| || |||| || |||||||| |||| | | | | || || | Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 66065 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 || |||||| | ||| || |||||||| || | ||||||||| | | || ||| || Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 || || ||||| || || | || |||||| | | || || ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 || ||||| | | | ||||| | || || || ||||| || | ||| | ||| || || Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 || || |||| ||||||||| | | ||||| || | || || || |||| |||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 66305 GCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 |||| | || |||||| || ||| || ||||| ||||| |||||| | Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATAC 2311 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAA 66423 || || || | || || ||||| || |||||||| ||||||||||| |||| || || Sbjct 2312 TAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAA 2371 Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 |||| || | |||| || ||||| || |||| ||| || ||||| || | Sbjct 2372 TAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACG 2430 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 | || || || | |||||| | || || ||||||||||| || ||||| || ||| Sbjct 2431 CATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCT 2490 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 |||||| ||||| || || | ||| ||||| ||||| || | || || | || Sbjct 2491 CCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCC 2550 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663 || || |||||||| || ||| |||||| ||||| || || ||||| ||||| || Sbjct 2551 CCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAA 2610 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTT 66691 | || || |||||||| || |||| || Sbjct 2611 AATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 212 bits (234), Expect = 8e-50 Identities = 375/542 (69%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || ||||| || || |||||||| ||||| || || ||||||| ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTC-AGAAAT 35985 |||||||||| ||||||||| || || |||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 | ||| || || || ||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 || | | |||||| | ||| | | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 |||||||||| || || || | | ||| | |||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 |||||||| || |||||||| || ||||| ||||| ||| |||||||||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCA-TG--TATCCACTT 36342 || || ||||| || |||| | ||||| ||| ||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||||||||||||||||| ||||| || | ||||| | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 36403 GT 36404 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657508399239880